RNA id: TCONS_00066523


Basic Information

Item Value
RNA id TCONS_00066523
length 2739
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_033977
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41748693 ~ 41753237 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTGAATGAGCAGCTCGCAGTCTCCGTCGGGCGCGCGGATGGCGCGGACGATTTTACGCGCACACCGTCAAGCATAATTGCTTGTTGAAAGCGGCAAAGCACAATGCAGTCCTCTTTATTGTCCGTGGCGCACTCTCCCGGGATACCTACAGCTGTTTCATTGATGTGGAAATCAGGAAACCATCAGTCGTCCAACTGGTCTGGGATGGAGAGAGAAAACGCGACGAGTCTCGCAGACTTGGACACCTTTGAGAACCGGCGCGCGCAGTACGGCCAGTTTTCTCCATCCACCTCCATATTCCTGACGGTGCTCATGACACTGCTGGTGTTCGCCACCGTCCTTGGGAACGCGCTAGTCATTTTAGCCTTTGTGGTGGAGAAAAGTTTACGCACACAAGGCAACTTTTTCTTTTTGAATTTGGCTATAGCAGACTTTCTTGTCGGCGGGTTTTGCATCCCCGTGTATATTCCGTACGTCCTGACGGGTGAGTGGAGACTGGGCAGAGGGCTGTGCAAACTGTGGCTGGTGGTGGATTATATGTTGTGCACCGCGTCAGTCTTCAACATCGTGCTCATCAGTTTCGACAGGTTTCAGTCCGTCACGAAAGCGGTGAGCTACCGCTGTCAGAAGGGGATCACCAAGGACGCTGTTCTGAAGATGCTGTGCGTGTGGCTGGCTGCGTTCCTCCTTTATGGCCCCGCTATTATCAGCTGGGAACACATCACAGGAGGAAGCGTAGTGCCAGACGGAGAGTGCTATGCCGAATTTTACTTCAACTGGTATTTTCTGATGACTGCCTCCACTGTGGAGTTCTTCACGCCGTTCATAAGCGTCACTTACTTCAACCTCAGCATTTACATCAACATCCGCAACAGGTGCGCCATGAGGGAGGAACAGCCCACTTACGTTCGGCTCAGGAGCTTCAAGATGAAGCCTCTTGGTGCTGGCGATGTCCAGCGAGTGTTTTTCGTGAGGCCTGTGGAGGAAAGCAGGGTCGCAGACTTGGCCTCGAGGTCACGGTGCTGCCGATTGGCTTCAACCGCTAAAGTGTCCGCCGCAGAGTTCGGCAATGGCAGACAGTCCAAACGAAGAGACAGCACTCTCGCAGACTTGCCTCCTCTGCAGGTGGAAGAGCGGATTCTGGCGGCCAGCGAGGCTCAGTTTCATTACGTGGATCATTCAGCTGGACCACACAGACACCGTCCGGACATGGTGGCCAGTCTAGCCAACCGTTTCCGCCTTTCTAGAGATAAAAAGGTGGCCAAGTCTCTGGCGGTGATAGTTTGTGTGTTTGGACTCTGTTGGGCGCCCTACACACTGTTGATGATCATTAGGGCTGCGTGTCATGGTCAGTGTGTCCAACATTACCTTTATGAGATCTCATTCTGGCTGCTGTGGATCAACTCGTCCATCAACCCAATCCTGTATCCCCTGTGTCACAGCAGCTTCAAAAGAGCCTTCAGCAAATTACTGTGTCCGAGCAAGACAAAAATACAACCTCAGAACATTGACCAGAAGTATTAGATTGATGAGGATGAGCACATCCACCTTTTTATTCTTCCTTTTTAATGTCATTGTAATTAGAAGTACTGAAGAGTAGCACATTTTCTTTGTGTTCATTGTCAGACCTTGTATTTGTTCCATTTTTCCAATGTGAAACCATGGCTATACACTAcataacaaaagtcttgtcatcgatcccagttgtaagagcaacaaataaaaacttgcctcctagttgatcatttggaaaagtggcaaaaggtaaatctttttctgatgaatcatctgttgaactgcatcccaatcattacaaatactgcagataaCCTGCATGGACCTATTCTCACAGAAATTTGTCAaatttggtaaaggaaaaatcatggcttggggttacattcagtatgggggtgtatgagagatctgcagagtggatggaaacatcaacagcctgaggtatcaagacatttggtctgcccattacattacaaatcacaggagagggcaaattcttcagcaggatagcgctccttctcatacttcagcctccacaccaaagttcctgaaagcaaaaaaggtcaaagtgtttcaggattggccagcccagtcaccagacatgaacattattgagcatacctggggtaagatggaggaggcactgaagatgaatctaaagaatcttgatgaactctgggagtcctgaaagaacgctttctttgcaatTCCAGGTGACTTTATATATAAGTCATTAGAcaagagtcattgcagagatgtagtGTATGGAtacagtcctctaagctcatgggagtcatacactatatgaattatttttccacagcaccatgactttatattctatactgaacattatttctgttaagtgaaaagacttctgtctaagcaaagtcagaccattaaatcattcaaaatcaaggcatgatcatatttcattttggtaaaataatcgtaatctagaggtctttgcctttcatataagccacttctgataccaaatgatcaactagaagtcaagttactatttgttcttcctaaaacttgaataaacgacaaggcttttgtcaggttgtgtctTTCTTCCAGATTCTATGATGGATTATTAGTTTGTTCATATTTTCATAAATGTACAAAGTGTCTCAGTGCCATGTTTAACtttgtaagtattttttttattaatacatgTCAAAATAAACCGTTTTAGTGATTTTATGAACCATT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0071880 adenylate cyclase-activating adrenergic receptor signaling pathway biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004938 alpha2-adrenergic receptor activity molecular_function
GO:0004969 histamine receptor activity molecular_function
GO:0051379 epinephrine binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-040724-204 Enables histamine receptor activity. Predicted to be involved in adenylate cyclase-activating adrenergic receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and regulation of neurotransmitter levels. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; heart; and spleen. Orthologous to human HRH3 (histamine receptor H3).

Ensembl:

ensembl_id ENSDART00000052168

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066516 lncRNA upstream 424161 41322445 ~ 41324633 (+) False XLOC_033972
TCONS_00068921 lncRNA upstream 445934 41295976 ~ 41302860 (+) False XLOC_033969
TCONS_00066527 lncRNA downstream 59274 41812511 ~ 41813343 (+) False XLOC_033979
TCONS_00068924 lncRNA downstream 614202 42367439 ~ 42387340 (+) False XLOC_033983
TCONS_00068926 lncRNA downstream 614220 42367457 ~ 42391959 (+) False XLOC_033983
TCONS_00068925 lncRNA downstream 614220 42367457 ~ 42391959 (+) False XLOC_033983
TCONS_00066536 lncRNA downstream 614230 42367467 ~ 42387360 (+) False XLOC_033983
TCONS_00066519 mRNA upstream 315008 41421998 ~ 41433786 (+) True XLOC_033974
TCONS_00066518 mRNA upstream 398396 41340520 ~ 41350398 (+) True XLOC_033973
TCONS_00066515 mRNA upstream 417828 41322407 ~ 41330966 (+) False XLOC_033972
TCONS_00066517 mRNA upstream 422500 41322502 ~ 41326294 (+) True XLOC_033972
TCONS_00066514 mRNA upstream 430594 41314862 ~ 41318200 (+) True XLOC_033971
TCONS_00066525 mRNA downstream 58953 41812190 ~ 41821361 (+) False XLOC_033979
TCONS_00066526 mRNA downstream 58953 41812190 ~ 41826318 (+) False XLOC_033979
TCONS_00066528 mRNA downstream 59399 41812636 ~ 41820917 (+) False XLOC_033979
TCONS_00066529 mRNA downstream 59580 41812817 ~ 41821333 (+) True XLOC_033979
TCONS_00066530 mRNA downstream 134192 41887429 ~ 41901688 (+) True XLOC_033980
TCONS_00066521 other upstream 166135 41582544 ~ 41582659 (+) True XLOC_033976
TCONS_00066520 other upstream 288359 41459653 ~ 41460435 (+) True XLOC_033975
TCONS_00066511 other upstream 446182 41301321 ~ 41302612 (+) True XLOC_033969
TCONS_00066505 other upstream 493547 41254621 ~ 41255247 (+) False XLOC_033968
TCONS_00066504 other upstream 494765 41252697 ~ 41254029 (+) False XLOC_033968
TCONS_00066524 other downstream 8024 41761261 ~ 41761379 (+) True XLOC_033978
TCONS_00066534 other downstream 560537 42313774 ~ 42313888 (+) True XLOC_033982
TCONS_00066541 other downstream 967168 42720405 ~ 42720519 (+) True XLOC_033987
TCONS_00066543 other downstream 1024763 42778000 ~ 42778114 (+) True XLOC_033988
TCONS_00066548 other downstream 2616326 44369563 ~ 44369679 (+) True XLOC_033998

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_12929788_12932668.mRNA True 2294 mRNA 0.45 3 CI01000026 12929639 ~ 12933391 (+)