CI01000026_16457911_16493848


Basic Information

Item Value
gene id CI01000026_16457911_16493848
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 16457583 ~ 16493955 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_16457911_16493848.mRNA
GTATAAATAGTGGGCTGTCAGAAGATGTGTGGAGTGACAGAGTCACGGGCTCTTTGATTCCCCAGGTGATTGGCCCTTTCATTGCCTGTGACAGCACACCTGCTGCCTTGCACTCTGCTGGGGAGACAGAGAAGAGCAAGAGAGAGAAAGAGAGAGAAAGACTGAACGAGAGAAGTGGGAGTTAGTGGGGAGGATTTGAAAAAGATTAACTTAAGCGCCAGGTTTGGATCAATATAAAATGATTATTAATAATAGATTAATAGATAGAGGAGGTGGGAAAGTGAGAGCCATATTAAGATCAATATATATATATAGAGAAAGAGAGAGCATGTGTGTATGTGTGGACACAAAAAGAGAAAGTAAATCCCTCTGGTGTATCAGGAGTTTCTCTCAACTAATCCTAACATCAGACTATAAGGTCACTCTAAGGCCTCGCTGTCTAATCACCCCTGCTGCTCACACGGTTACAGTTGAGCTCAAATCCCACTGGATTTCATCTGTTTGGCTTCCACTGAGAGAGAAGATCCTCAACATGACAGATCTAAATCTGCTGATTTGGTGCTATATTCCCATGTCTGATATTTGTACTGGGAGCACTTCGCAACTTATTCAGATTCTGGTAGACAAGACAATTGAGGAGACTGTAAACAAGGACACCCAGACTGCCGGTGGAACCAAGGGTTTCAGCCTAAAAACTGGAACAGTCACCAGATACTATCTCACCTCAGAAAACAGAAGTCAGTATCTGAGGCAACTCAGGAACATGACAAGGAATGAGTCTACAGAGTGTTTCAGTCATCAAGATTTACAGAAGCCCAGGATAGAGAAGGATATGGCAGATGTAAATGCCTTTGTAGAACTTATGGAGAGAAGCTGGGTAAACCCTCTAGGTCCAGATCAGTCTGATATCATTAGTCTTTCCACAGGAATGGCTGTGTCACCAGACATAGCCAGTGATCTGCTGCAAGCTCACCAGACTGGAGAGCAGGCATATCAGACGTTCAGAAGAGAACGTTTAAAAAGAGAGTCACCTGCAACCAAGTTCCATGACAAAATGAGAAAACAGAATCTGAAGACATTCTCAAGCATCAAAACAAGTGCTAGAGTAAAACAAGCACAGAAGAAAGAGAAACTAAAAGGTGATGGCAAGACTTTTGGAGAGATTGCTGGTTCTGTGCTGAACCTAACGTTGCATGAAGGAAGAAACAGTAAGCGGATAGATGTGGTGTTTGATGTGTACTGGAAAACATCAATCAAGAATGCTGAGAGGGACTGCTTAAAGCTGCATATACAGCTTGCCAATTACCAGGCAGCTGTCTGGAGGCACTGTCTGGAAAGACAGCCAGACATACCCGAACCAAAAGGACATGGATGGACAACTGATGACAAAGGCTCCTATGAAAAGCAGGTAAGTGGCTTGTTAGTGGGTAAGATTTCCCCCAGTGGCATGATTACTGACAGCTCAGGAGAGGCGGAGTTGGGAAAGAGTGAGACAGATAGGGAGTGTGCCAGGACATATGGGATTGGTGTAAACACAAAAATCTGGATTAACTACCTTACAGATAAGCTAAAAGAAGCAGACGGTGTCAACCAGCAGAGCCGACAGTTTACACACCAGCAGACGGTGGGATTCGTGACAGTATCTCAGTGGGAAGAAGGAAACTTGAGGCTGGTGGGCACCTGGGGAAATTCGTCTGGATCGCTCACACCTGCAGAGTTAGATGAAAGCGCAGAGATTACTGCGCTCCAGGGGATGCTGGCCACGTGCACTACTGCTGGCCACACTTCCCAAGCCAGCTTTAATAAGGGGATGCAGGAGAGAGAATGAGAAATGGAGAGATGTGCGCACCCTGAGAAAAAGCAAATGGTGGTGATTCAGGCTTGGCTGAGGAATCAATGTAAAATGAAACGAGTGGAAACCAAGAAGAAAACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_16457911_16493848.mRNA True 1935 mRNA 0.45 10 16457583 16493955

Neighbor

gene id symbol gene type direction distance location
CI01000026_16258182_16292938 DPY19L3 coding upstream 164630 16258182 ~ 16292953 (+)
CI01000026_16230831_16238059 NA coding upstream 218745 16230831 ~ 16238838 (+)
CI01000026_16112803_16120445 NA coding upstream 336550 16112281 ~ 16121033 (+)
CI01000026_15963447_15967856 NA coding upstream 489694 15962522 ~ 15967889 (+)
CI01000026_15864670_15915098 NA coding upstream 542421 15864544 ~ 15915162 (+)
CI01000026_16797241_16800469 S2544, SLC25A44A, SLC25A44, SLC25A44B coding downstream 302600 16796555 ~ 16801123 (+)
CI01000026_16806546_16810171 RABP1, CRABP1B, CRABP1, CRABP1.S, CRABP1A coding downstream 311542 16805497 ~ 16810375 (+)
CI01000026_16877087_16881790 LINGO1B, LINGO1 coding downstream 383132 16877087 ~ 16882253 (+)
CI01000026_16917517_16955729 NA coding downstream 423455 16917410 ~ 16955914 (+)
CI01000026_16965731_16979755 TRPM5 coding downstream 471776 16965731 ~ 16981131 (+)
G137380 NA non-coding upstream 59182 16382318 ~ 16398401 (+)
G137355 NA non-coding upstream 131624 16317274 ~ 16325959 (+)
G137335 NA non-coding upstream 158861 16297083 ~ 16298722 (+)
G137332 NA non-coding upstream 162905 16293615 ~ 16294678 (+)
G137333 NA non-coding upstream 164069 16293179 ~ 16293514 (+)
G137460 NA non-coding downstream 84611 16578566 ~ 16579159 (+)
G137468 NA non-coding downstream 117330 16611285 ~ 16611701 (+)
G137470 NA non-coding downstream 128279 16622234 ~ 16622438 (+)
G137472 NA non-coding downstream 130893 16624848 ~ 16625084 (+)
G137479 NA non-coding downstream 142357 16636312 ~ 16636560 (+)
G133542 NA other upstream 4980676 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 5202510 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 5378503 11075784 ~ 11079080 (+)
G133192 NA other upstream 6295622 10159819 ~ 10161961 (+)
G132667 NA other upstream 6888423 9568739 ~ 9569160 (+)

Expression


Co-expression Network