G133870


Basic Information

Item Value
gene id G133870
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10684072 ~ 10685719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU152243
CTCAACACACCTGCCTGGAAGTTTCTAGTATGCCTAGTAAGATCTTGATTAGCTGGTTCAGGTGTGTTTCATTGGGGTTGGAGCTAAACTTTGCAGGACAGTGGCCCTCCAGGACTGAGTTTGGACCCCCCTGATCTAAACCATCTGAGGTGACAGAATTTTTTTTTATTTATTGCAAATTAAGGTTACATATATTAACAGTGAGAAGAAAAACTAATTACTAGATTACAGAAATTACAAGATTGTTTTATTCACAATGTAACTGTTAATGGACATTATTAGAGTCTACTTTATGTATAGTACACAAATTCTTAAACGAATATATAAAAATATGCACTCTGACAAGGAAAAAAACAACTTATTAGCAATGTACAGTATATGAGATTCAGCATAAATGGCAGCATTTGCACATTGTGTATCTTCTAGCTGGACTCTGAAGCACACACTTGCTTATAGTACTCCTGCAGCATCTCCAGCTGGGCTGAGCGGATCAGCACATGAGGCCGGACTGAGGCCAGTATCTTACAGGCCTCCTCTGGACTCCAACAGTGTAGCCTGATGAGGTATGCAGCTGCAATAGTTGCACTGCGTGAGCGGCCGGCCTTGCAGTGAATATAGACACTAGTGCCTTGCTCTCGATGTCTTAAGGCAAAGTCCACACCCTTGTGGATGTGCTCTAGGCTGGGAACACCTGTCAGGTCCACTGTGTCGAGTCTGATCTGCTCAACGCCAACAGCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU152243 True 740 lncRNA 0.43 2 10684072 10685719

Neighbor

gene id symbol gene type direction distance location
CI01000026_10658906_10667378 CELF1 coding downstream 16319 10658574 ~ 10667753 (-)
CI01000026_10599580_10600367 NA coding downstream 83705 10599203 ~ 10600367 (-)
CI01000026_10487830_10511296 SLC7A10A, SLC7A10 coding downstream 171333 10485815 ~ 10512739 (-)
CI01000026_10421310_10440151 ABCC12 coding downstream 243145 10420159 ~ 10440927 (-)
CI01000026_10347872_10351783 CEBPA coding downstream 332289 10347746 ~ 10351783 (-)
CI01000026_10695298_10696443 C1QTNF4 coding upstream 9076 10694795 ~ 10696652 (-)
CI01000026_10713071_10715415 NA coding upstream 26507 10712226 ~ 10715727 (-)
CI01000026_10721380_10724373 C6AST4, C6AST3 coding upstream 35362 10721081 ~ 10724527 (-)
CI01000026_10730656_10743321 NA coding upstream 44937 10730656 ~ 10743321 (-)
CI01000026_10750149_10752108 NA coding upstream 64150 10749869 ~ 10752108 (-)
G133866 NA non-coding downstream 53653 10630209 ~ 10630419 (-)
G133786 NA non-coding downstream 56021 10552933 ~ 10628051 (-)
G133785 NA non-coding downstream 57040 10551667 ~ 10627032 (-)
G133741 NA non-coding downstream 136468 10547355 ~ 10547604 (-)
G133764 NA non-coding downstream 208324 10467810 ~ 10475748 (-)
G133838 NA non-coding upstream 68367 10754086 ~ 10754493 (-)
G133820 NA non-coding upstream 129098 10814817 ~ 10817409 (-)
G133790 NA non-coding upstream 148296 10834015 ~ 10859589 (-)
G133810 NA non-coding upstream 162335 10848054 ~ 10850265 (-)
G133889 NA non-coding upstream 180902 10866621 ~ 10866840 (-)
G132721 NA other downstream 1133428 9550030 ~ 9550644 (-)
G132575 NA other downstream 1296356 9387151 ~ 9387716 (-)
G131742 NA other downstream 2376365 8306776 ~ 8307707 (-)
G130256 NA other downstream 4366918 6275511 ~ 6317154 (-)
CI01000026_10788054_10788652 CD59 other upstream 101620 10787339 ~ 10789709 (-)
G133802 NA other upstream 616196 11301915 ~ 11307181 (-)
G136110 NA other upstream 3869198 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 6071010 16756729 ~ 16761341 (-)

Expression


Co-expression Network