G131742


Basic Information

Item Value
gene id G131742
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8306776 ~ 8307707 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU149845
TATATTTTTTTAATATATAGCCTTTATAATAATTAATCCAAGAAAGAGGAAACAAAAGGTCATGTCATATATCTTTATTAAAAGAAAATAAAGACAATATTCATGGCTGCTTTAGTTAGAAGCAATGGTCTGGTCAACCCAAGCACGGAGCGCGGTGACACGGGCGTACACCGCAGGGGTGGAAGTGGAGCAGGTGCTGCTTCCCCAGGACACGACACCAACCAGAGTCCAGACTCCATTCTTCTGACAGACCAGAGGACCACCAGAATCACCATGCAAGAAGAGACACCAGAGGCTCCAGCACAGATCATCAGATCAGTGATGTTGGTTCCCCAGTAACGCTTGCAGTCAGTGTTGGTCAGCAGAGGCAGAGCGGCCTGCTGGAGCAGGGGTGGGGTATTAGCATTGTACCTGGTCAGGCCCCATCCAGAGGTCACACACTTCAAGCCTCCAGCGAAGTTGTCACTGGTTTCAGCGAGACACACAGGAGACACGCGAGTGTTGAGCTGAGCGGGAGTGGCCAGCTTAATCAGGAGGATGTCATTGTTGATGGTGTAGCTGTTGTAGTTAGGGTGTATGATGGACTTTGGGAAGAGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU149845 True 597 TUCP 0.49 3 8306776 8307707

Neighbor

gene id symbol gene type direction distance location
CI01000026_08294878_08297151 NA coding downstream 9173 8294683 ~ 8297603 (-)
CI01000026_08254412_08284933 GALR1B coding downstream 21843 8254412 ~ 8284933 (-)
CI01000026_08150334_08189089 NA coding downstream 117687 8150334 ~ 8189089 (-)
CI01000026_07876455_07881355 TEX9 coding downstream 424039 7876340 ~ 7882737 (-)
CI01000026_07853925_07863410 NR1H3 coding downstream 443366 7853585 ~ 7863410 (-)
CI01000026_08308439_08310023 NA coding upstream 574 8308281 ~ 8310023 (-)
CI01000026_08337806_08350476 HSD11B2 coding upstream 30023 8337730 ~ 8350818 (-)
CI01000026_08396549_08398206 NA coding upstream 87605 8395312 ~ 8398311 (-)
CI01000026_08501499_08526463 SLC12A4 coding upstream 193792 8501499 ~ 8526463 (-)
CI01000026_08591640_08612056 SLC6A2 coding upstream 283695 8591402 ~ 8612460 (-)
G131743 NA non-coding downstream 7126 8298932 ~ 8299650 (-)
G131774 NA non-coding downstream 42322 8264184 ~ 8264454 (-)
G131768 NA non-coding downstream 56726 8248321 ~ 8250050 (-)
G131673 NA non-coding downstream 102387 8194927 ~ 8204389 (-)
G131668 NA non-coding downstream 132344 8166840 ~ 8174432 (-)
G131766 NA non-coding upstream 8935 8316642 ~ 8317696 (-)
G131785 NA non-coding upstream 54980 8362687 ~ 8362902 (-)
G131787 NA non-coding upstream 56148 8363855 ~ 8364157 (-)
G131788 NA non-coding upstream 56818 8364525 ~ 8364877 (-)
G131804 NA non-coding upstream 95860 8403567 ~ 8403786 (-)
G130256 NA other downstream 1989622 6275511 ~ 6317154 (-)
G129750 NA other downstream 3487494 4785885 ~ 4820249 (-)
G129658 NA other downstream 3933707 4367296 ~ 4373069 (-)
G129476 NA other downstream 4635892 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 4816273 3438795 ~ 3490503 (-)
G132575 NA other upstream 1079444 9387151 ~ 9387716 (-)
G132721 NA other upstream 1242323 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 2040486 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 2479632 10787339 ~ 10789709 (-)
G133790 NA other upstream 2526308 10834015 ~ 10859589 (-)

Expression


Co-expression Network