G129658


Basic Information

Item Value
gene id G129658
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4367296 ~ 4373069 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU147383
GAAGGAAATTTGCAGATAGCTTTCTTTTTTATTCCCAGTGCAGAAATGTACAAAAACACTTGAATACATTCACACACTGGTCAATTTTGGAACAAACATGAACTTTTTTTTGTGTTAACACTCATATATACATGTATATATACAGCATGTGAGTATATCTAATGAAAACTGATTTTCTAGTTATCTGACATGAAAGGCCTTCTCATTACGAATCTCTATTTTAACGGCAGGAAATCTATAATTTGCATGCATGTACGTGTTGGAAATCCTGGAGGGTTAAGGTAAACTTTCATTTAGCTAAAGAAAATACAACATCCCTGTCATTTCCCCCACTCCCACAACCCCATTCCCCCAATCCAAAGCAATCTTGTAAAAATAAAAAGGGTAAAGAAATAACTATTTCCATAAAAAGGAAATCATTGTTTCCTTGTGAAACAGACATACTGAAGTATATCAACAATTGTAAAATCCAGCAGTCTGTCCCTGCGCATGAGAATTTTTCCAGGAGTCCAGTTCTTGTTTCTGCTTCTCCAGCTCCTCTTTCTCTTTCTGAAACTCCTCTCTCTCCTTCTGCATCTCCTCTTTTTCCCTCTGGAGTTCATTCTTCTCCTTCTGGAGGTCTTCTTTTTCCTTCCGCAACCTTGCGTGCTCCTGCTCTTGTTCACATTTCTGGTTTTGAAGCACTCGGCGCTCAGCATCCATTTCACGGAACTGCTGCAGTAACTCTTTCTGCAGCTGTATGCTCCGCCCCTCTTCCTGCTGGACACGCCTCAACGCCTCTGTCAGCTCCCGCTCTCTTTCCAATATACGCACGCCCTCAGACCACTTAGCACCTGAGTATCTGTCTAGGCTGGTACTGCAGGGTGAACGGACGTCACGCTTCGGTGACACAATTTGCGATCTGGTCGGGGTCCCGCTTGCTAATGTGGGAGAGGAAGCAAGCCGGCTCGGATCTTCAGATTTGCGCTTGTTAGGCCGCTTTTGTGGGTGATCCTCAAGTTGTGCAAACTCATTGGGATGCTTATGCTGTAGATGTCTGATAAGGTTACTTGTGCTACTCCGGTGCTGGATCTTCTCCATGCAGAGCAAGCACAGGGCTCGTGGCTCCTGGCCAAGCTTCCGGTAGTGCACCCACACGGAGCTCCACTTGCGAGTATTACCTGGGGCTTCATCCTCTTGTATTTCTTTCCCATCCCCTTCATCAACAGGCCCCTCGCCTTCCTCATCAGCCACCTCTGCTTCAGCTGTCCCCTCTCCAGCTGCAGCACGAAGGATCCCTTTGATGGCACCATCCATTTCGCCATCTTCTCCCACAGACTCCACCTCTACCTGCTGCTCGTCCATTAACACTGTAACTTCCACGCAACCAGTGTCGTTGCGCTTGGATACCGCATCTGTCGCGGGCTTCCTTTTGTCCAACGAGGAAAAATCTGACGGGTGTTTCGTTCTTAAATGGCGAAGCATGTTTGTTGTGTGACCAAAATACAAAACCGTCTTCATACAGAGAAGACACAATACTCTTCTGTCATCCTCAGCTTGGAAAAATGACCAGACTATACTTCGCTTTCGTGCCGCCATTTTCGAACGAGTCGACTTTGAATACTGACTGACTGATTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147383 True 1620 TUCP 0.46 3 4367296 4373069

Neighbor

gene id symbol gene type direction distance location
CI01000026_04359229_04359987 THAP11 coding downstream 6840 4358157 ~ 4360456 (-)
CI01000026_04341911_04342442 NRN1LB coding downstream 24854 4341677 ~ 4342442 (-)
CI01000026_04255428_04291509 NA coding downstream 73349 4255111 ~ 4293947 (-)
CI01000026_04154066_04159758 NA coding downstream 207538 4154052 ~ 4159758 (-)
CI01000026_04126777_04133370 NA coding downstream 232625 4125104 ~ 4134671 (-)
CI01000026_04396015_04397830 FBXL8 coding upstream 22836 4395905 ~ 4397921 (-)
CI01000026_04416862_04417674 EXOSC6 coding upstream 43738 4416807 ~ 4417984 (-)
CI01000026_04430286_04481358 HERC1 coding upstream 56743 4429812 ~ 4482544 (-)
CI01000026_04488350_04491905 DAPK2A coding upstream 115199 4488268 ~ 4491905 (-)
CI01000026_04510794_04529529 TRPM1, TRPM1A coding upstream 137557 4510626 ~ 4529529 (-)
G129642 NA non-coding downstream 100416 4261781 ~ 4266880 (-)
G129638 NA non-coding downstream 116118 4250917 ~ 4251178 (-)
G129603 NA non-coding downstream 171828 4194169 ~ 4195468 (-)
G129657 NA non-coding upstream 13994 4387063 ~ 4425882 (-)
G129724 NA non-coding upstream 127406 4500475 ~ 4501716 (-)
G129735 NA non-coding upstream 177131 4550200 ~ 4550437 (-)
G129739 NA non-coding upstream 183484 4556553 ~ 4557005 (-)
G129747 NA non-coding upstream 207233 4580302 ~ 4580515 (-)
G129476 NA other downstream 696412 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 876793 3438795 ~ 3490503 (-)
G127418 NA other downstream 2631190 1735777 ~ 1736220 (-)
CI01000026_00986386_01002180 NA other downstream 3364707 986182 ~ 1002180 (-)
G129750 NA other upstream 439981 4785885 ~ 4820249 (-)
G130256 NA other upstream 1902442 6275511 ~ 6317154 (-)
G131742 NA other upstream 3933707 8306776 ~ 8307707 (-)
G132575 NA other upstream 5014082 9387151 ~ 9387716 (-)
G132721 NA other upstream 5176961 9550030 ~ 9550644 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033779 sinhcafl coding NC_007118.7 CM002891.2 29053217 ~ 29062157 (+)