CI01000026_00986386_01002180


Basic Information

Item Value
gene id CI01000026_00986386_01002180
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 986182 ~ 1002180 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_00986386_01002180.mRNA
GTATTGTGTACGGCGATGCTGCGCGACAGTATGAGGCCAAGCGGAGCACTAATGACAGTGATGCTGCTGGCCGGCCATGTGTTGATTGTCATGCCTTCGAGTTCATGCAGAGAGCTTTGCAAGACCTGAAGAAAACAGCTTTCAACTTAGACTCACGGGTCTGGTATATCGTTGATGTATGCAGACTGATGTTGCGCAGCATCGTCGTGACGTTGCTGATACTGCAATCACACGCGGGGTTCATGGCGCTCCAGAGCGCATCACATGAAGCCATCGGTTCACTCTCCCCCCAAAACACAAACATTTTATTTCAGGCCAGTTGCATGCATTGTTCGTCTCCCAAAATGGTTTGCGAGACTAAAATCGTTGCAGACGAACACGAGGCCATAGCTGGGACCAAAAAAGATTCAATTATAGTTTCCTCCTCGCAAATGTGGACGTCTTCTTCGCCTTCTCCCAGTGCGCTCGAGAGTAAGGTTGAAAAACGGAACCAGGTTTTTATTCGCGAATTTGAACGCTCGGACCATGAGGAGGTGCGCCGGATCTTCAACGAGGGAATCATGGAGCGGATACCTAATTCGGCATTTCGGGGTCTAAAACAGCAAACTAGAACCCAAATTATCTATGCCTTTCTCACAGTAATGTGCTATGTTATGACCAAATCCTTCACACTGACCTTCTGCGCACCGTTTATTCTAATGGGTGCACGTTATTACTACAGCAGAAAAGTCATTCTCAACTACCTGGACTGCGCTCTGCACACTGATATGGCTGACATTGAGGCATATTACATGAAACCCACAGCTTTAACGTTGAAGACTCATGAAATATGCAGAAAGTCTCTCTCAGTACTTCTCTTGAGGATAACTGTTCATGAGTCATGTGGGCCTATTGATTGAAGGCAGGAAAAATGCTGATACAAATTGTATTGCGGCAAACTCACCCCCCAATTTTACCCAATTTTAAGCACAGAGAGAACAAACTTAGAGTTTAGTGATAACCACAACAAACCTTTCAGGTGGATAAAATTGCAGTAGAACCTGTACAGTTAAAGAATCTGATTGTGCATATAACTGTGATACAGTAGTAAACTTACCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_00986386_01002180.mRNA False 1103 mRNA 0.45 6 986182 1002180

Neighbor

gene id symbol gene type direction distance location
CI01000026_00909358_00915047 PTGR1 coding downstream 71135 909190 ~ 915047 (-)
CI01000026_00904115_00907709 NA coding downstream 78428 903924 ~ 907754 (-)
CI01000026_00898521_00902621 NA coding downstream 83490 898219 ~ 902692 (-)
CI01000026_00781130_00793571 SLC7A8A, MGC53111, SLC7A8, SLC7A8.L coding downstream 192611 779899 ~ 793571 (-)
CI01000026_00767991_00775879 GMPR2, GMPR2.S coding downstream 210303 767991 ~ 775879 (-)
CI01000026_01011341_01018429 FAAH2B coding upstream 8438 1010618 ~ 1018469 (-)
CI01000026_01055165_01071118 PIK3C3 coding upstream 52735 1054915 ~ 1071118 (-)
CI01000026_01083369_01088304 RGP1 coding upstream 80863 1083043 ~ 1088304 (-)
CI01000026_01112372_01124229 NA coding upstream 109741 1111921 ~ 1124229 (-)
CI01000026_01135025_01137262 CMTR2 coding upstream 132473 1134653 ~ 1138260 (-)
G127152 NA non-coding downstream 39352 942761 ~ 946830 (-)
G127144 NA non-coding downstream 55463 930394 ~ 930719 (-)
G127143 NA non-coding downstream 56884 928995 ~ 929298 (-)
G127134 NA non-coding downstream 115991 868742 ~ 870191 (-)
G127104 NA non-coding downstream 221202 764747 ~ 764980 (-)
G127174 NA non-coding upstream 16671 1018851 ~ 1026158 (-)
G127240 NA non-coding upstream 260010 1262190 ~ 1262404 (-)
G127275 NA non-coding upstream 385799 1387979 ~ 1388196 (-)
G127278 NA non-coding upstream 391227 1393407 ~ 1393608 (-)
G127279 NA non-coding upstream 397126 1399306 ~ 1400928 (-)
G127418 NA other upstream 733597 1735777 ~ 1736220 (-)
CI01000026_03439507_03490314 PDE3B other upstream 2378605 3438795 ~ 3490503 (-)
G129476 NA other upstream 2668394 3670574 ~ 3670884 (-)
G129658 NA other upstream 3365116 4367296 ~ 4373069 (-)
G129750 NA other upstream 3810870 4785885 ~ 4820249 (-)
G127171 NA non-coding downstream 5068 994521 ~ 994779 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034717 nat8l coding NC_007118.7 CM002891.2 24457191 ~ 24472991 (-)