CI01000026_01055165_01071118 (PIK3C3)


Basic Information

Item Value
gene id CI01000026_01055165_01071118
gene name PIK3C3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1054915 ~ 1071118 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_01055165_01071118.mRNA
AGGCAGTCTGGAGGGCAAGAGAGAGCAGAAGAGCTACAAAGCTCTGCTCGAGGACCCCATGCTGCGATTCTCAGGACTCTATCAGGAGAGTTGCTCCGACCTGTACGTCACCTGTCAGGTCTTTGCTGAGGGAAAGCCACTTGCTCTGCCAGTACGAACATCTTACAAGGCCTTCAGCACACGCTGGAACTGGAACGAGTGGCTTAGGCTGCCAGTGAAGTACCCTGACCTGCCTCAGAGTGCCCAGGTGACTCTAACTGTTTGGGATGTGTATGGACCCGGCCGTGCCACACCTGTTGGGGGCACTACAGTCACCCTGTTTGGGAAATATGGAATGTTCCGGCAGGGCATGCATGATCTGAAGGTGTGGCCGGGCGTGGAAGGTGATGGCAGTGAGCCCACTAGTACACCAGGAAGGACCAGCAGCACTCTGGCAGAGGACCAGATGGGCCGCCTAGCCAAGCTAACTAAAGCTCATCGTCAGGGTCACATGGTTAAAGTAGACTGGCTGGATCGCTTGACCTTCAGAGAGATTGAGATGATCAATGAGAGTGAGAAACGCAGCTCTAATTTTATGTACCTAATGGTGGAATTCCCCCGTGTCAAAAGTGGCGAACGAGAATACAGCATTGTGTATTACGAAAAGGATGCAGATGAATCCTCCCCTTTGCCGACCAGTTCAGATATTGTGAAAGTCCCTGACCCTCAGATGTGCATGGAGAACCTTGTGGAGAGTAAGCATCATAAACTGGCCCGTAGTTTGCGCAGCGGACCATCTGACCACGATCTCAAACCCAACGCAGCCACACGTGATCAACTCAATATCATAGTGAGCTACCCACCCACTAAACAACTAAGCTCTGAGGAACAGGACCTAGTGTGGAAGTTTAGATACTACCTCACCACACAAGAAAAGGCTTTGACTAAGTTCCTGAAGTGTGTGAACTGGGATCTGCCCCAGGAGGCCAAACAAGCCCTGGAGCTGCTGGGAAAGTGGCGGCCGATGGATGTGGAGGATTCCCTGGAACTGCTGTCCTCTCAGTTCACCAACCCCACAGTCAGACGCTACGCTGTCGCGAGGCTGCAGCAGGCTGACGATGAAGATCTGCTAATGTACTTGCTCCAGCTGGTACAAGCATTGAAATACGAGAACTTCAACGATATCCAGGGTGGTTTGGAGCCTGCCAGTAAGAGAGACAGTCAGGGGGTTCTGGTAGAGAGCTCAACAATAGGAGATCTAGACAGTTCCCAGATGACATCGACCATCACCGTGATGCCCAGTGGACAGAAAGGCAAAGAGGGAACAGATGGTGAAAATCTAGAGCAAGACCTGTGCACCTTCCTTATATCACGTGCCTGCAAAAACTCCACACTGGCAAACTATTTATACTGGTATGTAATTGTGGAGTGTGAGGATCAGGACACCCAGCAGAGAGACCCAAAAACCCATGACATGTACCTCAATGTGATGAGGCGGTTTAGTCAGGCTCTGCTCAAGGGTGATAAGAGTGTAAGAGTGATGCGCTCCCTTCTGGCCTCCCAGCAAACGTTTGTAGACAGACTAGTGCAACTCATGAAGGCCGTTCAGAGAGAAAGCGGAAACCGCAAGAAAAAGACGGAGCGGTTACAGAGCCTGTTGGCTGATAATGAGAAGGTGAATCTGTCAGAGATCGAGCCCATCCCTCTCCCTCTGGAACCCCAAATCCGCATCAAAGGCATCATACCTGAGACTGCAACACTCTTTAAGAGTGCTCTGATGCCAGCAAAGCTCATCTTTAAGACAGAGGATGGGGAGCAATATCCAGTCATCTTTAAACATGGAGATGACCTGAGACAGGACCAGCTCATCCTGCAGATCATTTCACTCATGGATAAGTTGCTGAGGAAAGAGAATTTGGACCTAAAGTTGACTCCATACAAAGTTCTGGCGACCAGCACCAAACATGGTTTTATGCAGTTTGTGCAGTCAGTGCCTGTGGCTGAGGTATTGGCGACTGAAGGCAACATTCAGAGTTTCTTTCGAAAGCACGCTCCGAATGATAAGGGCCCATATGGCATCAGCTCTGAAGTCATGGACACATATGTTAAAAGCTGTGCGGGTTATTGTGTCATCACCTACATCCTAGGTGTTGGAGACAGACATCTAGACAATTTACTTCTCACAAAGACTGGGAAGCTGTTTCATATCGATTTTGGGTATATTTTGGGTCGGGACCCTAAACCCCTGCCACCCCCTATGAAGCTGAGCAAGGAAATGGTGGAAGGGATGGGGGGCATGCAGAGCGAACAATACCAGGAATTCAGGAAACAGTGCTACACTGCCTTCCTGCACCTACGCAGATACTCCAATCTCATTCTGAATTTGTTCTCTCTGATGGTGGATGCAAATATTCCGGACATTGCGCTGGAGCCCGACAAAACTGTAAAAAAGGTTCAGGACAAGTTTCGACTGGACCTCTCAGATGAGGAAGCAGTGCATTATATGCAGAGTCTGATTGATGAGAGTGTAGGGGCTTTGTTTGCTGCAGTGGTTGAGCAGATACACAAATTTGCACAGGCTTGTGGGCTGTGGTTTATTAAAGCTGAACTTAACCAATACAGACTTTTTTCCACTCTGCTACGTTTGGTCAACAAGAAACTTGACATTTAAAACTCGAGTCATCTGCTGAGTGAAATGGCAGTAAATATCTGTGCTTTTAGAAATCAGTTTGGAGGCGGTATATTAGCCACACATGATTATGGCTTTACGAAAAGACCAGTTAAACAACAAATTTCCCTCTTTCTAACTTACAGTATTTATTAACTAATTTCTCTTCACTGTTACAGTTCCAAAATTAATTTGAACCAATAAGACCTCACAGAATTCTACATGTCGACTTTCTCAAAAAGGAGAAAATAAA

Function

symbol description
pik3c3 Predicted to enable 1-phosphatidylinositol-3-kinase activity. Predicted to be involved in several processes, including autophagosome assembly; phosphatidylinositol-3-phosphate biosynthetic process; and phosphatidylinositol-mediated signaling. Predicted to act upstream of or within phosphorylation. Predicted to be part of phosphatidylinositol 3-kinase complex, class III, type I and phosphatidylinositol 3-kinase complex, class III, type II. Predicted to be active in several cellular components, including endosome; peroxisome; and phagophore assembly site. Used to study inflammatory bowel disease. Orthologous to human PIK3C3 (phosphatidylinositol 3-kinase catalytic subunit type 3).

GO:

id name namespace
GO:0005770 late endosome cellular_component

KEGG:

id description
K00914 PIK3C3, VPS34; phosphatidylinositol 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_01055165_01071118.mRNA True 2900 mRNA 0.48 24 1054915 1071118

Neighbor

gene id symbol gene type direction distance location
CI01000026_01011341_01018429 FAAH2B coding downstream 36446 1010618 ~ 1018469 (-)
CI01000026_00986386_01002180 NA coding downstream 52735 986182 ~ 1002180 (-)
CI01000026_00909358_00915047 PTGR1 coding downstream 139868 909190 ~ 915047 (-)
CI01000026_00904115_00907709 NA coding downstream 147161 903924 ~ 907754 (-)
CI01000026_00898521_00902621 NA coding downstream 152223 898219 ~ 902692 (-)
CI01000026_01083369_01088304 RGP1 coding upstream 11925 1083043 ~ 1088304 (-)
CI01000026_01112372_01124229 NA coding upstream 40803 1111921 ~ 1124229 (-)
CI01000026_01135025_01137262 CMTR2 coding upstream 63535 1134653 ~ 1138260 (-)
CI01000026_01159823_01161906 NA coding upstream 88044 1159162 ~ 1161906 (-)
CI01000026_01211595_01215959 OTUB1, OTUB1B coding upstream 140477 1211595 ~ 1215959 (-)
G127174 NA non-coding downstream 28757 1018851 ~ 1026158 (-)
G127171 NA non-coding downstream 60136 994521 ~ 994779 (-)
G127152 NA non-coding downstream 108085 942761 ~ 946830 (-)
G127144 NA non-coding downstream 124196 930394 ~ 930719 (-)
G127143 NA non-coding downstream 125617 928995 ~ 929298 (-)
G127240 NA non-coding upstream 191072 1262190 ~ 1262404 (-)
G127275 NA non-coding upstream 316861 1387979 ~ 1388196 (-)
G127278 NA non-coding upstream 322289 1393407 ~ 1393608 (-)
G127279 NA non-coding upstream 328188 1399306 ~ 1400928 (-)
G127282 NA non-coding upstream 337812 1408930 ~ 1410546 (-)
G127418 NA other upstream 664659 1735777 ~ 1736220 (-)
CI01000026_03439507_03490314 PDE3B other upstream 2309667 3438795 ~ 3490503 (-)
G129476 NA other upstream 2599456 3670574 ~ 3670884 (-)
G129658 NA other upstream 3296178 4367296 ~ 4373069 (-)
G129750 NA other upstream 3741932 4785885 ~ 4820249 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017491 pik3c3 coding CM030131.1 CM030131.1 7459064 ~ 7475022 (+)