CI01000026_04255428_04291509


Basic Information

Item Value
gene id CI01000026_04255428_04291509
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4255111 ~ 4293947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_04255428_04291509.mRNA
ACACAATATTCAACCAGGATATACAGACATACAACATAAAAACACAATATTCAGCTGGGCGTATAGACAACCACAACAAAAGCACTACATATTGTACAGATGGACATACCATTGGATGTGTGTTAGTTGAATGGTGAGATTTTCTTTTTTAAACTAGTACCATCAATCTATCAAGATCAAATCAGCATACAGCACAGGACAGAAGGAGAGGGGAAGGGAGGCCACTTGTCCTATATGGTGTGCTGTACTCAGGCACAAAAACACAAACCTATACTTTATCTCACTCACACACACACACAAACACACATACAATGTCACAAAGCTCATTTGGTCCCTCAGCTGGGTCCTCTGTCAGGGTCACAGCCATTTACTCTGTCCCATCCATCAGCACAGACTACACATGATCGTTACCCACACACCCACCCTCACAAATACAGCTCTTAGCCTCAGATATATACTCACAAACACCAAGGCACACATTCGCTCTTAATTGTATGCCTAATATGCAGAGAAAAATCTTGGTTAATGTTTCCTGTTTCGTCACATTCAATTATGAATTACATGAAATTTCGCAAAAAAGTAGTAGTTTGCATCACTGTATACTACTGTTGGTCATTTACCATTTTTAGCGTAACAGTTGCCATCTTACCGTTCTGGTCATGCTGGTATTTCTGCTCGGCTTGTGTGAACAGCATATATATCCCACCTTGTTTGATTTGACTGGCCATCTCAAACATTCTGACATCGACAAGCACTGAAAGACTGCTGAAGCAGGCCATCCTAAAATTGTACTTTTTTTGTCATCCTAACCATGGATATCTATATGTAGATACCTCATTTCACTGCTTTCATTAGAAACTAATAGAAATTTGGCTGTAAGGTTCTCTGATGATCAATAATATTTATTATTAAATTTATTAATATTTATTAAGAGCTTTAAACAATATATTAAGCAGAATTTTCTAACATTAAAGATAAATTAAATCTTATTAAAATCATCTGCTGAACATATATATGGGTCACTGACAAATAAGGTTTTTAAAAGTGTAAAAAAAAAAAAACATAATGGAGATATAATAAATTTTTAAGTTTTATTAAGTGTTAATGAGATTATGCAGTTTTTATAATGAAATTAACACTGCTTTTTGTAATTTTTTTTTACAAGATGGACAAAATCTGTCACCAAAAAAGTCATTCGGTTTAACCAAAATTCGGTTTTACCGAATGGCGATATTTTCAAACAATGCTAACAGGCTTATATCTAGATAGCTAGCTAATTAGCTTGCTAGCTAGCTAGCAAAAGTACAATCAAACATTTTATATTTAGCACAAGTTTTTAAAAATGACATTTTCCATGTTTTATAGTGGTTGTACCAAATGACCTGATGTTTTGGGACATGCGTATGAGCAAATGAATACATGAATTTTTCATACAATTGAGAGAGAGTTAGTTAATTTGCTTCACAACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCCCATCCTGTCACATGATATTAACCGCATGACTTGATACAAAATGGTCCCTTTATATTGGTTACTCCAAATGATGTCAATGAAATTAATTTTCCAAACATTCTTTCTCATAACAAAAGCAACGACTTCTACACAATTTTAATACCATTTTCACTATGTTGACATATGATGTTATAAAATCATGCCAGAATAAAAAATATATACATTTATTACAATTATTTTAAATCACAAATGAAATGGCTGTATTGGCCTTTGGACGGTTAAACCGAATGACCTTTTGACACTTCAAAATCTTTAAAATACCTTTATATGTAGCAAAATATAATTAAAACCTTTTGGATTCAATAAAAGAGATCTAGTTGTACTACCTTACATACTTTGGATGTCATATCTTTGTTTTTTTATTATTATTAAGGCCTTTGGACAAAAAAAAAAAAAGACCCGTCACGTCATTGACCCAGATACAGATATTCATACATGTGAATAACTATGCTTGCAAACTCACGGTCAGCTTGCTCTGAGTTACGTACGGACTGGCTTTGATCATTCCAGTATAGTGGATAGCTTATGTATGGTGGCCCATAGAAACAGTTGCTAATAAGGCCCTACATATATCTATGATCCTAACAATAACACAGCAAACACAGCAGTGTTGTAATGGAGTGCAGCATAGTAATCTTTGGTAGGTAAAATTTAGCCCCCCTCAATTTACAGCCCTGTCTAAACCCACTCATAAGCTCTGAACAGAGACCCCTTTGCAGTCTCAAAGAATATTTTGACACCTTTAGCCCTGTTAAGCCCTCAAAAGCAAGCATATTTTCAAAACCAAATGCTTAAATTCTTAATTTAAAAAAAACATAGTGTTGAAATCCCTTGTGTTATGGAAATGCCGTGCATTTCGTTGTAAGTGCAGTTCAATAAACACCAAACTCTTTAAATATGCCGCTCAGACATGACAGACAGCAGTGTAGGGAGTCAGTGGCGCATATGTACGCCAAAGCTCAGGGGAGGGGAGAAGAAATCCAAACAAATCAATGCAGGCCGAGCCCCGGAGAGACGGGAGCCTCCACCACCGCCAATTACTGCAGCGCAGAAACAAACACAGTGGAAGTGAACTGGAAGAGAAGGCAAAGTCTGCTGCTAGCAGGTAAAGCTGTAGTTTTGCATGTGCGTGAGGCCGAGAGAGGGGAAGAGGGGGGTCTGGATAGACTCACACAGGCAGGTTTGCTGGGTCTGGCAGTGCAGGCAGGCCACTCTGTAATTTACAGAGGTGGAATGCAGCATGCAGCCGCGGGGTTTCAGGACGAGACGCTGTGCAGCGCGTCTGAATCTCAAGCACCAAACATACACGGCTGTTTCACTCTCAGCTGTCTGTCTCCAGCTCCAGCAGACAACAAAAACGTCGCAATAGAGGGGTCCTGGTGCTGCATGAGGCCCAAGAGAGCCACTCACTTCCAGGTCGGTCCGAACTGGCGTTCTTCAGTGGGGTCACTTATTCGGTCTAACTTGCCACCCAGGAGCGGCTCGAACGTGTGCATAAATCAGGCAGTGGTTCTGGTGGCCCTTGCTGGCGCAGGATACTCGGGAGTTCGTATCTGCCTGTCCGGCGTGTGCGGTGGACGTGGTGCTATGCTATCTCTTAGCTCTCACGGCATGCTGGGGAGAGATATGGAGGGAAATAGCACCTGCACCAGTGGAGGCTTACAAAGTGTTTCTCTGTTGTCAAATGTCTCAGCTTGGAAAGACAGCTCTGCGATAGTTATGGGAGAGAAGGGAATTTAAATAAGAGATGGGGGACTAAAGTCCCATTGTCTGTGAAACAACTGTTTATTTTCTGTTCCTCCACACTGTCAAGGTTGGCATTAGGTGCGTCATTTGAAGTTGACAGCACAGTGAAGGGTTTGCACGCTCGCTAGTGGAGTCATGATGCAGATTCCAGCTGATGATCCTGTCATGTTCACTTGTTTCAGCTCGCCTCTCTCAGTACATTGACAGACATGACAAAGAAAGATTTTTCATTCATTAAAAAAGGAAGACCATCTTTCCCAAAATAAA
>TU147318
CGTCATTTGAAGTTGACAGCACAGTGAAGGGTTTGCACGCTCGCTAGTGGAGTCATGATGCAGATTCCAGCTGATGATCCTGTCATGTTCACTTGTTTCAGCTCGCCTCTCTCAGTACATTGACAGACATGACAAAGAAAGATTTTTCATTCATTAAAAAAGGAAGACCATCTTTCCCAAAATAAAATGAGTGATGGAATGATAATTGCAATCCTAAAGGATGAATAAAC

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_04255428_04291509.mRNA False 3554 mRNA 0.40 5 4255155 4293947
TU147318 True 230 lncRNA 0.40 1 4255111 4255340

Neighbor

gene id symbol gene type direction distance location
CI01000026_04154066_04159758 NA coding downstream 95397 4154052 ~ 4159758 (-)
CI01000026_04126777_04133370 NA coding downstream 120484 4125104 ~ 4134671 (-)
CI01000026_04083042_04094349 NA coding downstream 160088 4082797 ~ 4095067 (-)
CI01000026_04067135_04076151 SLC7A6 coding downstream 179004 4066989 ~ 4076151 (-)
CI01000026_04038343_04060958 SCUBE2 coding downstream 194197 4037500 ~ 4060958 (-)
CI01000026_04341911_04342442 NRN1LB coding upstream 47730 4341677 ~ 4342442 (-)
CI01000026_04359229_04359987 THAP11 coding upstream 64811 4358157 ~ 4360456 (-)
CI01000026_04396015_04397830 FBXL8 coding upstream 101958 4395905 ~ 4397921 (-)
CI01000026_04416862_04417674 EXOSC6 coding upstream 122860 4416807 ~ 4417984 (-)
CI01000026_04430286_04481358 HERC1 coding upstream 135865 4429812 ~ 4482544 (-)
G129638 NA non-coding downstream 3977 4250917 ~ 4251178 (-)
G129603 NA non-coding downstream 59687 4194169 ~ 4195468 (-)
G129581 NA non-coding downstream 132460 4122396 ~ 4122695 (-)
G129579 NA non-coding downstream 135665 4119148 ~ 4119490 (-)
G129578 NA non-coding downstream 136975 4112623 ~ 4118180 (-)
G129657 NA non-coding upstream 93116 4387063 ~ 4425882 (-)
G129724 NA non-coding upstream 206528 4500475 ~ 4501716 (-)
G129735 NA non-coding upstream 256253 4550200 ~ 4550437 (-)
G129739 NA non-coding upstream 262606 4556553 ~ 4557005 (-)
G129476 NA other downstream 584271 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 764652 3438795 ~ 3490503 (-)
G127418 NA other downstream 2519049 1735777 ~ 1736220 (-)
CI01000026_00986386_01002180 NA other downstream 3252566 986182 ~ 1002180 (-)
G129658 NA other upstream 73349 4367296 ~ 4373069 (-)
G129750 NA other upstream 519103 4785885 ~ 4820249 (-)
G130256 NA other upstream 1981564 6275511 ~ 6317154 (-)
G131742 NA other upstream 4012829 8306776 ~ 8307707 (-)
G132575 NA other upstream 5093204 9387151 ~ 9387716 (-)
G129642 NA non-coding upstream 6441 4261781 ~ 4266880 (-)

Expression


Co-expression Network