CI01000026_04067135_04076151 (SLC7A6)


Basic Information

Item Value
gene id CI01000026_04067135_04076151
gene name SLC7A6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4066989 ~ 4076151 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_04067135_04076151.mRNA
ATTGGATAAGGCTGACGAGGGCCACTTTTGTCTCTGAGCACCAACACGTACGTCTGTGGAACAGGATGGAGAACGAGACTGAATCCAAAAAGCTGAACGGCCAGCCTGAGGGTCCTGCGACCCTTTCAAAACCCAAAGAGAGCATGCAGCTCAAAAAGGAAATCTCTCTCCTGAACGGCATCAGCCTCATCGTGGGGAACATGATTGGCTCAGGCATATTTGTGTCGCCAAAGGGGGTTCTCATCTACAGCGCCTCCTACGGACTGTCTCTAGTTATCTGGGCCATCGGTGGCATCTTTTCAGTGGTAGGTGCTCTCTGTTACGCAGAGTTGGGCACGACAATCACTAAATCCGGCGCCAGCTACGCCTACATCCTGGAGTCTTTTGGAGGCTTCATGGCGTTCATACGTCTATGGACATCGCTGCTCATCATCGAACCCACGAGTCAGGCTGTTATTGCCATCACCTTTGCCAACTACTTGGTTCAGCCGCTCTTCCCCACCTGCGAGCCGCCGTATTCTGCTTCTCGACTTATTGCTGCAGCCTGTATCTGCCTGCTGACCTTTATAAATGCGGCTTATGTCAAGTGGGGTACCAGGGTGCAGGATGTCTTCACTTATGCCAAAGTGCTGGCCCTCATTGTCATTATTATCACAGGGATAGTGAAACTGGGCCAAGGTTTCACAATGAACTTCGAGGATTCTTTCCAAGGCTCGTCTCGTGACCCAGGAGATATCGCTTTGGCATTGTACTCGGCTCTTTTCTCGTACTCAGGCTGGGACACTCTTAATTTTGTCACAGAAGAAATTAAGAACCCTGAAAGGAACCTTCCTCTCTCCATTGCGATCTCCATGCCCATCGTTACGATCATCTACATCCTCACAAACGTGGCCTACTACGCTGTGCTTGACATGAGTGCCATCCTCGCCAGTGATGCTGTCGCTGTGACGTTTGCAGACCGCACCCTGGGAGTGATGAGTTGGACCATCCCCATTGCGGTTGCTTTATCTTGTTATGGAGGTCTTAATGCTTCCATCATTGCTGCATCTAGGTTGTTCTTTGTGGGAGCTCGAGAAGGTCATCTTCCAGATGCTTTGTCCATGATTCATGTTCAGAGATTCACACCAGTTCCTGCACTGCTATTTAATGCAATGGAGGATGTTTTCCAGCTGATTAACTATTACAGCTTCAGTTACTGGTTTTTTGTTGGCCTTTCAATTGCTGGGCAGATCTACCTTCGCTGGAAGGAGCCAGACAGGCCCCGACCACTGAAGTTGAGTCTGCTGTATCCCATCATCTTCTGCATTTGTGTCGTGTTCCTGGTGGCTGTGCCGCTTTATTCTGACACACTCAGCTCACTCATTGGAATTGCTATTGCCCTCTCTGGAGTTCCTGTTTACTTTTTGGGTATCTATCTTCCAGAGTCTAAACGCCCACCCATCATCACTAAACTACTAAAAATACGACCTTCTGAACTTTATGGCGTGAAAATAGAGGCCATTTTAAAGTTCTGGTTCATAATGGTACCAGTGGGCTTACGATGGAAACATCATCTGTATTCCTCTCAGTGAAATGAGAACATGAACAGGATGCAGTGGTTTGCGTGTGCCCTTATGAACATGGCCAAGAGTTAGATTTGTGTTTGTAACATTTTTCTCTATTTTTTAACTAACATGCTTTTATTTTAGAATCTAGATTTTACAATTTGTCAATTAAA

Function

symbol description
slc7a6 Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to act upstream of or within amino acid transport and transmembrane transport. Predicted to be located in basolateral plasma membrane. Predicted to be integral component of membrane. Is expressed in ball and yolk syncytial layer. Orthologous to human SLC7A6 (solute carrier family 7 member 6).

NR:

description
intestinal cationic amino acid transporter y+LAT2, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K13872 SLC7A6; solute carrier family 7 (L-type amino acid transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_04067135_04076151.mRNA True 1717 mRNA 0.47 9 4066989 4076151

Neighbor

gene id symbol gene type direction distance location
CI01000026_04038343_04060958 SCUBE2 coding downstream 6031 4037500 ~ 4060958 (-)
CI01000026_04035446_04036660 TMEM9B, TMM9B coding downstream 30329 4034428 ~ 4036660 (-)
CI01000026_03973706_04011187 ST5 coding downstream 55802 3973280 ~ 4011187 (-)
CI01000026_03950848_03969190 NA coding downstream 97799 3950294 ~ 3969190 (-)
CI01000026_03938864_03942893 RERGL, RERGLB coding downstream 124096 3938273 ~ 3942893 (-)
CI01000026_04083042_04094349 NA coding upstream 6646 4082797 ~ 4095067 (-)
CI01000026_04126777_04133370 NA coding upstream 48953 4125104 ~ 4134671 (-)
CI01000026_04154066_04159758 NA coding upstream 77901 4154052 ~ 4159758 (-)
CI01000026_04255428_04291509 NA coding upstream 179004 4255111 ~ 4293947 (-)
CI01000026_04341911_04342442 NRN1LB coding upstream 265526 4341677 ~ 4342442 (-)
G129460 NA non-coding downstream 427481 3639200 ~ 3639508 (-)
G129457 NA non-coding downstream 436616 3630120 ~ 3630373 (-)
G129451 NA non-coding downstream 449827 3616875 ~ 3617162 (-)
G129448 NA non-coding downstream 461962 3604819 ~ 3605027 (-)
G129444 NA non-coding downstream 471546 3595207 ~ 3595443 (-)
G129578 NA non-coding upstream 36472 4112623 ~ 4118180 (-)
G129579 NA non-coding upstream 42997 4119148 ~ 4119490 (-)
G129581 NA non-coding upstream 46245 4122396 ~ 4122695 (-)
G129603 NA non-coding upstream 118018 4194169 ~ 4195468 (-)
G129638 NA non-coding upstream 174766 4250917 ~ 4251178 (-)
G129476 NA other downstream 396105 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 576486 3438795 ~ 3490503 (-)
G127418 NA other downstream 2330883 1735777 ~ 1736220 (-)
CI01000026_00986386_01002180 NA other downstream 3064400 986182 ~ 1002180 (-)
G129658 NA other upstream 291145 4367296 ~ 4373069 (-)
G129750 NA other upstream 736899 4785885 ~ 4820249 (-)
G130256 NA other upstream 2199360 6275511 ~ 6317154 (-)
G131742 NA other upstream 4230625 8306776 ~ 8307707 (-)
G132575 NA other upstream 5311000 9387151 ~ 9387716 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110506393 LOC106562049 coding NC_048590.1 CM023244.2 22086432 ~ 22100994 (+)