CI01000026_08501499_08526463 (SLC12A4)


Basic Information

Item Value
gene id CI01000026_08501499_08526463
gene name SLC12A4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8501499 ~ 8526463 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_08501499_08526463.mRNA
ATGCCCCATTTCACTGTTGTACCAGTACAGGATAACTCACCGTCCAACTATGACAGCCTGGAGGGAATAAACTGGGTGGATTACAGAGACACAGGACAGGGAGGATACCCTGGACATGGAGACACAGTTAGCTCAGATGGTCATGGCAATCATAAAGAAGACAGTCCATTCCTCAGCAGTTCAGACTCAGCATCTAAGAGGAATGACTTCTATGACAAAAACCTGGCTCTGTTTGAGGAAGAGCTGGACATCCGGCCAAAGGTCTCGTCTCTCCTCAGCCGGCTGGTCAATTACACAAATGTTACTCAGGGAGCCAAAGAACATGAAGAGGCAGAAAGTGCTGATGCATCCCGGAAACAAGTGCCCAAGTCACCGAATATGGGCACGCTGATGGGAGTGTACCTGCCATGTCTGCAGAACATATTTGGTGTGATTCTTTTTCTGCGTCTCACCTGGATAGTGGGAACAGCAGGTGTCGTCCAGTCCTTCCTCATCGTTCTCATGTGTTGTTCATGCACAATGTTAACAGCAATCTCGATGAGTGCCATAGCCACCAATGGTGTAGTTCCAGCTGGTGGAGCCTATTTCATGATATCTCGGTCTCTGGGCCCTGAGTTCGGTGGTGCAGTTGGTCTGTGTTTTTATTTAGGCACAACTTTCGCTGCTGCCATGTACATACTGGGAGCAATTGAAATATTTCTGAAATACCTGATTCCCCAGGCTGCCATATTTCATCCTGCAGATATTCATGCAGGGAGTGGAGCAATGCTGAATAACATGCGGGTATATGGCACAATATGTTTGAGCCTTATGGCTGTAGTTGTCTTCGTGGGGGTCAAGTATGTCAACAAATTTGCCTCCCTCTTCCTGGCCTGTGTCATAATCTCCATTGTTTCTATCTATGCCGGAGCTGTCAAATCCATCTTCCAACCTCCTGAGTTTCCGATCTGCATGTTAGGAAACCGGACGCTGGTTCGTGATTTGTTTGATGTTTGTGACAAGAAAGTAGTTGTCGGTAATGAGACGGTTCCCAGCAAGCTTTGGAAGAACTTCTGCAGCTCTGAGAATTCCAGCAGTGCTCATTGTGACGAGTACTTCGCTCAGAACAATGTTACAGAGATCCCGGGCATTCCAGGGCTGGCCAGTGGGATAATTAAAGAAAACATGTGGGGGGATTACATGGAAAAAGGGCAGATTCTCGAAAAGGCAAGCCTGTCCTCTGTTGATGTCCATGGCTCCATGGAGACCTTTGGCTTCTATGTGTCTGCTGACATTGCCACTTCCTTCACCCTCTTGGTGGGAATCTTTTTTCCTTCTGCCACAGGCATTATGGCAGGATCAAACAGATCTGGAGATCTAAGAGATGCACAGAAGTCTATACCAATAGGGACGATTCTGGCCATTACAACTACCTCTCTTGTCTATTTCAGCTCTGTGGTTCTGTTTGGGGCCTGTATTGAGGGAGTGGTGCTGAGAGATAAATTTGGAGACGCCGTCAGAAAAAACTTGGTGGTTGGCACCCTGTCTTGGCCCTCTCCTTGGGTCATTGTGATTGGCTCATTCTTCTCCACAGTGGGTGCAGGACTTCAGTCCCTGACTGGAGCTCCCCGCCTCCTGCAAGCCATTGCTAAAGATAACATCATCCCTTTCCTTAGAGTCTTTGGACACGGTAAAGCTAACGGAGAGCCCACGTGGGCTTTGCTTCTGACGGGACTCATAGCAGAGCTCGGCATCCTCATTGCATCATTGGATATGGTCGCACCTATTCTCTCCATGTTTTTCCTGATGTGTTATCTTTTTGTAAACTTGGCATGTGCAGTACAAACACTTTTAAGAACACCAAACTGGAGACCACGGTTCAGATACTACCACTGGGCTCTGTCTTTTCTGGGCATGAGTATGTGTTTAGCCCTTATGTTTATCTCCTCTTGGTACTATGCCATTGTAGCAATGGGCATTGCTGGTATGATCTACAAGTACATTGAGTATCAGGGAGCAGAGAAGGAATGGGGGGATGGGATCCGTGGATTGTCTCTTAGTGCCGCCCGTTACGCACTCCTTCGCCTGGAAGCTGGACCTCCCCACACCAAAAACTGGAGGTTGCCACAGCTGCTGGTTTTGCTGAAGTTGGATGAGGACCTACATGTAAAGTATCCCAGAATGCTTACCTTTGCCTCACAGCTGAAGGCAGGAAAAGGCCTAACCATTGTAGGTTCTGTGATACAGGGCAACTTCCTGGAATGCTATGGGGAAACACAAGCATCAGAACAGGCAATAAAGAACATGATGGAGATTGAGCGGGTGAAGGGCTTTTGTCAGGTGGTGGTTGCCTCCAAAGTGAGAGAGGGGATCGCACATCTGATCCAGTCCTGTGGTCTGGGAGGAATGAAGCACAACACAGTTGTTATGGGTTGGCCATATGGCTGGAGACAGAGTGAAGACCCACGGGCTTGGAAAACCTTTATTAATACAGTCCGCTGTACTACTGCTGCCCACCTGGCTCTGATGGTCCCAAAAAACGTGTCATTCTATCCCAGCAATCATGAGCGCTTTACTGATGGATATATTGATGTCTGGTGGATTGTCCATGATGGTGGAATGCTCATGCTCCTGCCTTTCCTTCTCAAACAACATAAGGTCTGGCGTAAATGTAAGATGCGAATCTTCACTGTGGCTCAAATGGACGATAACAGTATTCAGATGAAGAAGGACCTGGCAACCTTCCTGTATCAGCTGAGATTAGAAGCAGAGGTGGAAGTGGTTGAGATGCACGACAGCGACATCTCGGCATATACGTATGAGCGGACACTGATGATGGAACAGAGGTCACAGATGCTAAAACAAATGAGGCTCTCCAGTGCAGAGAGAGACAGAGAGGCCCAACTAGTGAAGGATAGACACTCGCTGATCAGAATGGGCAGTTTGTATTCAGATGAAGAAGAGGAAACCATTGAAGTATTACCAGAGAAAAACCAGATGACCTGGACTAGTGAAAAAATAGAAGCAGAAAGACGAAACCGAAGCAATGCCCCAGAAAACTTCAGAGAACTAATCAGCATTAAACCG

Function

symbol description
slc12a4 Predicted to enable potassium:chloride symporter activity. Predicted to be involved in several processes, including cell volume homeostasis; inorganic ion homeostasis; and inorganic ion transmembrane transport. Predicted to act upstream of or within potassium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural keel; anterior neural rod; central nervous system; eye; and margin. Orthologous to human SLC12A4 (solute carrier family 12 member 4).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14427 SLC12A4_6, KCC1_3; solute carrier family 12 (potassium/chloride transporter), member 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_08501499_08526463.mRNA True 3066 mRNA 0.48 22 8501499 8526463

Neighbor

gene id symbol gene type direction distance location
CI01000026_08396549_08398206 NA coding downstream 103188 8395312 ~ 8398311 (-)
CI01000026_08337806_08350476 HSD11B2 coding downstream 150681 8337730 ~ 8350818 (-)
CI01000026_08308439_08310023 NA coding downstream 191476 8308281 ~ 8310023 (-)
CI01000026_08294878_08297151 NA coding downstream 203896 8294683 ~ 8297603 (-)
CI01000026_08254412_08284933 GALR1B coding downstream 216566 8254412 ~ 8284933 (-)
CI01000026_08591640_08612056 SLC6A2 coding upstream 64939 8591402 ~ 8612460 (-)
CI01000026_08620867_08632135 LPCAT2 coding upstream 93563 8620026 ~ 8632135 (-)
CI01000026_08633986_08658997 NA coding upstream 107091 8633554 ~ 8659318 (-)
CI01000026_08722735_08726049 IRX6A, IRX6 coding upstream 195676 8722139 ~ 8726194 (-)
CI01000026_08861639_08866198 IRX5A, IRX5 coding upstream 335176 8861639 ~ 8868149 (-)
G131809 NA non-coding downstream 88867 8412370 ~ 8412632 (-)
G131808 NA non-coding downstream 90588 8410677 ~ 8410911 (-)
G131805 NA non-coding downstream 95947 8405173 ~ 8405552 (-)
G131804 NA non-coding downstream 97713 8403567 ~ 8403786 (-)
G131788 NA non-coding downstream 136622 8364525 ~ 8364877 (-)
G132053 NA non-coding upstream 57353 8583816 ~ 8584127 (-)
G132064 NA non-coding upstream 135383 8661846 ~ 8662046 (-)
G132065 NA non-coding upstream 136225 8662688 ~ 8663010 (-)
G132066 NA non-coding upstream 138035 8664498 ~ 8664886 (-)
G132076 NA non-coding upstream 167077 8693540 ~ 8693778 (-)
G131742 NA other downstream 193792 8306776 ~ 8307707 (-)
G130256 NA other downstream 2184345 6275511 ~ 6317154 (-)
G129750 NA other downstream 3682217 4785885 ~ 4820249 (-)
G129658 NA other downstream 4128430 4367296 ~ 4373069 (-)
G129476 NA other downstream 4830615 3670574 ~ 3670884 (-)
G132575 NA other upstream 860688 9387151 ~ 9387716 (-)
G132721 NA other upstream 1023567 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 1821730 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 2260876 10787339 ~ 10789709 (-)
G133790 NA other upstream 2307552 10834015 ~ 10859589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020285 slc12a4,LOC107696691,LOC107548948,LOC107563468,LOC107740471,LOC107657107 coding CM030127.1 CM030127.1 14462413 ~ 14484977 (-)