CI01000026_08591640_08612056 (SLC6A2)


Basic Information

Item Value
gene id CI01000026_08591640_08612056
gene name SLC6A2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8591402 ~ 8612460 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_08591640_08612056.mRNA
AGATATATACAGTTATTCCATGAAGTGTGGCGCGTCCAACAGGAAATGTCGACTGGTTGTCACTAAAGTTTCTTTTCTTCGTTACCAGCGACAAAACGCTTTCGCACATTCATTGATTGTAAATCGTTTTGCGCGCTCGGTTGTTTAACATGTTGATGGTGCATGGGATGCTAATGTCTCACTGTAATAGAAAACTTTCATTTCTCCTCTCTTTCAGCTGATCTCTTCCTCACCGGGAGAGCCAACTGCTGTAGCGTTTCCTATTCATCATCATCATCATCATCATCATCCTCAGCATCATCATCATCATCATCATCATCAGCAGCATCATCATCGTCAGTGCGAGCGGCACGCACCTCACTTGCTCCACATCCTCGGGGCCACGAGAGCGCCTGGGCGCAAAGATGAACATCCAAGTCCTGCCCGAGCACAAACTGTCCTCGGTGGCCCCGTTGAAACAGTTTAACGTAGAGAAAAAGGAAGTGGAGCTGATCCTGGTGAAGGAGCAGAATGGGGTCCAGTACACGAACTCCTCTGTCGTGGCCTCTCCGAGCTCCCATGGCTGCGCTGAGGAGGTGGAGAGGGAGACCTGGGGAAAGAAACTGGACTTTCTACTCTCTGTCATAGGCTTTGCTGTGGACCTGGCCAATGTCTGGAGGTTCCCCTACCTGTGTTACAAAAATGGAGGAGGTGCCTTTTTGATCCCATATATTCTGTTCCTGTTTATTGCTGGGATGCCTCTGTTTTACATGGAACTTGCCCTGGGCCAGTACAACAGAGAGGGAGCAGCTACTGTTTGGAAGATCTGCCCTGTATTTAAAGGCGTGGGCTACACTGTGATCGTCATAGCATTGTATGTGGGCTTTTACTACAACGTCATCATAGCCTGGTCTCTGTATTACTTATATGCTTCATTGACAAGTGAGCTGCCCTGGCTCAGATGTAATAACCTGTGGAACAGCCCCAACTGCACAGATCCAAAGCTCATCAATGGCACCTTCTTGGGTAATGGAACCTCCTATGCCAAGTACAAGAACACACCGGCTGCAGAGTTCTACGAACGAGGGGTGCTGCACATTCATGAGAGTAAAGGCATCGATGACCTGGGTCTTCCTCGCTGGGAGCTCACCATCTGCCTTGTTGTGGTCGTCTTCATCCTCTACTTCAGCCTATGGAAGGGAGTCAAATCCTCTGGAAAGGTGGTGTATATTACAGCTACTATGCCCTACATAGTGTTGTTGGTGTTGCTGATTCGAGGCATCACTCTCCCTGGTGCAATGAATGGAATTAGGGCATATCTCCACATTGACCTAAAGAAGCTCAATAACCCTCAAGTATGGATTGATGCAGCTACTCAGATATTCTATTCTCTAGGAGCTGGGTTTGGAGTCCTTATTGCCTTCGCTAGCTACAATAAATTTGACAATAACTGCTACAGGGATGCTATTCTGACCAGCACAATAAACTGCATAACCAGTTTCTTCTCAGGGTTTGCCATCTTCTCAGTACTGGGGTATATGGCTGATCAACATGGTGTCAACATAAAGGATGTGGCCACTGAGGGAGCTGGACTGGTGTTTATTATCTACCCAGAAGCAATTTCAGCTCTACCTGGATCTACATTCTTCGCGATAGTCTTTTTCATTATGCTTCTGACACTTGGAATTGACAGCTCTATGGGCGGCATGGAGGCAGTAATCACTGGGCTCTCAGATGACTTCAAAATCCTCAAGAGGAATAGAAAGTTATTTACGTTTGCTACAGCATTTGGGACATTCCTAGTAGCCCTTCTGTGCGTCACAAATGGAGGGATCTATGTGTTGACCTTGTTGGACAAGTATGCTGCAGGGACATCCATTCTATTTGGGGTGCTGATTGAGGCCATTGGAGTATCTTGGTTCTATGGCGTGGACAGATTTAGTGAGGACATTGAACGCATGATGGGCTTCAAACCAGGGATCTACTGGAGGCTCTGCTGGAAGTTTGTCAGTCCAGTGTTCTTATTGTTTGTGGTGATCGCCAGTATTGTTACTTCCGGCGACCTGAGATATGATGAATATACTTTCCCTTACTGGTCAAATTTTGTGGGCTGGTCCATAGCCTTGTCCTCCATGCTGTTTGTACCCATCTATGCCATCTACAAATTCCTCAGTATGCCAGGAAGCTTCAAAGAGAGGATAGCGTACTGCATTACTCCAGAACATGAACATCACATGGTGGCCGAGGGTAATGTCAGACAGTTCAAGCTCAGACATTGGTTATCCATCTGATGAAGGGGTCAGGTGGGAATTCCCTACTGCTACTTGAATGCTGGAGAAGATATGGTGTGTGTGAGAGAGAAAGGTTTCTGCAAAGATCTCTTACTGTATGAAAAGTGTCCCCTGAGAAAAGGACAGAATGAAGCGATGGCTTTGTGCGTTTCCCAACCACACACTATACTGTCCAGTCTGCTCCATTTGTGTTCAGTGGTTGACTTGAATTTTTTTTTATATTGTAGGGCAAAATAAA

Function

symbol description
slc6a2 Predicted to enable dopamine:sodium symporter activity and norepinephrine:sodium symporter activity. Predicted to be involved in dopamine uptake involved in synaptic transmission; norepinephrine transport; and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body membrane; and presynaptic membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in hypertension and neurocirculatory asthenia. Orthologous to human SLC6A2 (solute carrier family 6 member 2).

GO:      GO:0005333, GO:0005330, GO:0005328, GO:0043005, GO:0015293, GO:0015874, GO:0016021, GO:0016020, GO:0051583, GO:0005887, GO:0006810, GO:0006836

KEGG:

id description
K05035 SLC6A2, NET; solute carrier family 6 (neurotransmitter transporter, noradrenalin) member 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_08591640_08612056.mRNA True 2508 mRNA 0.46 14 8591402 8612460

Neighbor

gene id symbol gene type direction distance location
CI01000026_08501499_08526463 SLC12A4 coding downstream 64939 8501499 ~ 8526463 (-)
CI01000026_08396549_08398206 NA coding downstream 193091 8395312 ~ 8398311 (-)
CI01000026_08337806_08350476 HSD11B2 coding downstream 240584 8337730 ~ 8350818 (-)
CI01000026_08308439_08310023 NA coding downstream 281379 8308281 ~ 8310023 (-)
CI01000026_08294878_08297151 NA coding downstream 293799 8294683 ~ 8297603 (-)
CI01000026_08620867_08632135 LPCAT2 coding upstream 7566 8620026 ~ 8632135 (-)
CI01000026_08633986_08658997 NA coding upstream 21094 8633554 ~ 8659318 (-)
CI01000026_08722735_08726049 IRX6A, IRX6 coding upstream 109679 8722139 ~ 8726194 (-)
CI01000026_08861639_08866198 IRX5A, IRX5 coding upstream 249179 8861639 ~ 8868149 (-)
CI01000026_09147356_09156946 NA coding upstream 534868 9147328 ~ 9158526 (-)
G132053 NA non-coding downstream 7275 8583816 ~ 8584127 (-)
G131809 NA non-coding downstream 178770 8412370 ~ 8412632 (-)
G131808 NA non-coding downstream 180491 8410677 ~ 8410911 (-)
G131805 NA non-coding downstream 185850 8405173 ~ 8405552 (-)
G131804 NA non-coding downstream 187616 8403567 ~ 8403786 (-)
G132064 NA non-coding upstream 49386 8661846 ~ 8662046 (-)
G132065 NA non-coding upstream 50228 8662688 ~ 8663010 (-)
G132066 NA non-coding upstream 52038 8664498 ~ 8664886 (-)
G132076 NA non-coding upstream 81080 8693540 ~ 8693778 (-)
G132091 NA non-coding upstream 114590 8727050 ~ 8727287 (-)
G131742 NA other downstream 283695 8306776 ~ 8307707 (-)
G130256 NA other downstream 2274248 6275511 ~ 6317154 (-)
G129750 NA other downstream 3772120 4785885 ~ 4820249 (-)
G129658 NA other downstream 4218333 4367296 ~ 4373069 (-)
G129476 NA other downstream 4920518 3670574 ~ 3670884 (-)
G132575 NA other upstream 774691 9387151 ~ 9387716 (-)
G132721 NA other upstream 937570 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 1735733 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 2174879 10787339 ~ 10789709 (-)
G133790 NA other upstream 2221555 10834015 ~ 10859589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034903 slc6a2 coding NC_007118.7 CM002891.2 35348471 ~ 35380186 (-)