CI01000026_08620867_08632135 (LPCAT2)


Basic Information

Item Value
gene id CI01000026_08620867_08632135
gene name LPCAT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8620026 ~ 8632135 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_08620867_08632135.mRNA
ATGCCTCCGCAGAGAGTGTTCGCGCTGCCCAGACAGCATTCCCTGCTGCTGCCCGCCGTCATCAACCCATTCCTACACGACCTTAATTTAACCAAAGCCGATAAAATCAAATGTTTTCTTCTAGGAATCATCCTTGTGCCGCTCCGTGCCATTTTCTTGCTTCTCGTTATAATGGTCATGTGGCCGGTTTCTGTCATGATTACATTCAGACAGTCTCTGAAAGGAGCGGTGGAGCCAATGACTGGCTGGAGAAGGTTCTTGCACAAAAGGGTGATGACCTTTCTAGGCCGGATGTATTTTTTCGGGATGGGTTTCAGGGTGGTGGTGAAGGGGAAGCAGGCTAGCTGTGTAGAGGCCCCCATTTTAGCTGTGGCCCCTCACTCTTCTTTCTTTGATGCCATCGCCTGTATTGAAGCTGGTCTGCCCTCTACCGTATCCCGCTCAGAGTCCCTGGAAGCACCAATCTTTGGCAGGTTTTTGCGCTGTGTGCAGCCAGTGCTTGTTTCACGCAAAGATCCAGACTCTCGTAGAAACACTATACTTGAGATTGAGCGGAGAGCAAAGTCAGGAGGACACTGGCCACAGGTGCTCATTTTTCCTGAAGGAACATGTACAAACAGATCATGTCTCATTACCTTCAAACAAGGTGCCTTTGTCCCAGGGGTCCCAGTACAGCCTGTCCTTATCAGATACCCAAATAAGTTGGACACAGTCACATGGACATGGCAGGGTCCAAAATCTTCCTGTTTTAGGGCCAGATTACTGCTGCTCACACTCTGCCAGCTCTATACTACAGTGGAGGTCGAGTTTCTGCCCCCTCAAGTTCCTACTGAGATGGAGAAAAAATGTCCTACCAAGTTTGCTCAGTCAGTGAGATCTGTCATGGCTATGTCCCTAGGCCTGCCGGTCACGGACCACACTTATGAAGATTGTCGTCTGATGATTGCAGCTGGAGAACTGACACTGCCTATGGAGGCAGGTCTCGTGGAGTTTACCAAGATCAGCAGGAAATTGGAATTAAAATGGGATAACGTGAAGAAGGAACTGGAGAGTTTTGCCAACATAGCCTGTTCTTGCAAAGGTGGGAGGATCACAGTTGAAGAGTTTGCCAGCTTCCTCAAACTACCTCTCAGCCCAGTTCTACATGAGCTCTTCGCTCTGTTTGACAGGAATGGGGATGGCACCATTGATTTCAGAGAGTATGTCATTGGTGTCACAGTTCTGTGCCGACCAGCTAATAATGAGGAAATCATTCAGACTGCTTTTAAGCTGTTTGACATCGATGAGGACAACTGTATCACACAAGAGGAGTTTAGCAGTTTGATACGTTCTGCTCTTGGAGTGTGTGATCTTGACGTCAACGGCCTCTTCACAGAAATCGACGCAGATGGATCAGGACACATAACTTATGATGAGTTTCGTTCCTTCGCTCTCACACACCCGGAGTATGCCAAGCTCTTCACCACCTACATCGAGCTACAGCGTTACCAGGGTCTCCAAGGTGGGGAGCCAGACTGTGACGCCTCTTTGTCTTACTTCTGTTCTGCTTCTCATGATGAAGACCAAGAGGATAGTACCTCTGATAAGAAAGATGACTGACACAGTTGAAGAAGCATGCAGCTATGAGGTTCATACTTTGCCATGCCATTTGAACACTTGCCTTATACTTGGGTGGAGTGTTTTTGTACACAAGCATATGCCCTATCAGCAAATTTGGTTTTTCGTTTACACAAGGTATTTCATAAACTATTCAATGATTTATTTAAAGGCATTCAGAACAATGTTTACAGCATGTTAAAATGTATAATCAAGCTAAAACACTTCTTAATCTGTTGTAGCTTAAAAAAAAAGTTTATTATTCTTCACCTTTCAGCTTTTAGACATGAAGCTTGTAGTCCCAACTCAGTTTTTCATTCATTTCAATGAAGTCTAAATAATAATTGTTATTTGCTTAAATCTAATTGAGGAAAAAAAAAAAAAAAAAGTAATTTTATGATTAAATTCATGGAGATCATGTACTTATACACAGGTCTCACTTTATGGAAAATGGATATTTTTTTAGAATTAATATATTGTAAAAGAGTTTCTTATACAAATACAAAGTTTATTTTATTTTAATTTTCTTTTCTTTTCTCTCTGCTCAGGGACTTCTGAGTTTTAATCAAAGGTTTTGCTTTGCATCTTGTTTTTATTTGCATTCCCATTGAGGGGAAATGTTGCTGAGTTAGCATTCTGTCCCTGCTGCTTGTTCAGACTAATACTCTGTTGCATCCACTGAAAATAGGCCAATTTGTGAGCAAACAGGCAACACAACACTCCCACAGTAGCGCACACCAGAGGGCTTGGTTCCAAATTATCCCACTGCAGTGGTATTTATTTAGCAATGCAGGTTGCAATTATGATTTTGTTAACACAGCAAAGTTAGCTTTTTGCCATTAAA

Function

symbol description
lpcat2 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity and 1-alkylglycerophosphocholine O-acetyltransferase activity. Predicted to be involved in phospholipid metabolic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human LPCAT2 (lysophosphatidylcholine acyltransferase 2).

NR:

description
lysophosphatidylcholine acyltransferase 2, partial

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_08620867_08632135.mRNA True 2440 mRNA 0.43 14 8620026 8632135

Neighbor

gene id symbol gene type direction distance location
CI01000026_08591640_08612056 SLC6A2 coding downstream 7566 8591402 ~ 8612460 (-)
CI01000026_08501499_08526463 SLC12A4 coding downstream 93563 8501499 ~ 8526463 (-)
CI01000026_08396549_08398206 NA coding downstream 221715 8395312 ~ 8398311 (-)
CI01000026_08337806_08350476 HSD11B2 coding downstream 269208 8337730 ~ 8350818 (-)
CI01000026_08308439_08310023 NA coding downstream 310003 8308281 ~ 8310023 (-)
CI01000026_08633986_08658997 NA coding upstream 1419 8633554 ~ 8659318 (-)
CI01000026_08722735_08726049 IRX6A, IRX6 coding upstream 90004 8722139 ~ 8726194 (-)
CI01000026_08861639_08866198 IRX5A, IRX5 coding upstream 229504 8861639 ~ 8868149 (-)
CI01000026_09147356_09156946 NA coding upstream 515193 9147328 ~ 9158526 (-)
CI01000026_09203430_09218432 FTO coding upstream 571295 9203430 ~ 9218432 (-)
G132053 NA non-coding downstream 35899 8583816 ~ 8584127 (-)
G131809 NA non-coding downstream 207394 8412370 ~ 8412632 (-)
G131808 NA non-coding downstream 209115 8410677 ~ 8410911 (-)
G131805 NA non-coding downstream 214474 8405173 ~ 8405552 (-)
G131804 NA non-coding downstream 216240 8403567 ~ 8403786 (-)
G132064 NA non-coding upstream 29711 8661846 ~ 8662046 (-)
G132065 NA non-coding upstream 30553 8662688 ~ 8663010 (-)
G132066 NA non-coding upstream 32363 8664498 ~ 8664886 (-)
G132076 NA non-coding upstream 61405 8693540 ~ 8693778 (-)
G132091 NA non-coding upstream 94915 8727050 ~ 8727287 (-)
G131742 NA other downstream 312319 8306776 ~ 8307707 (-)
G130256 NA other downstream 2302872 6275511 ~ 6317154 (-)
G129750 NA other downstream 3800744 4785885 ~ 4820249 (-)
G129658 NA other downstream 4246957 4367296 ~ 4373069 (-)
G129476 NA other downstream 4949142 3670574 ~ 3670884 (-)
G132575 NA other upstream 755016 9387151 ~ 9387716 (-)
G132721 NA other upstream 917895 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 1716058 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 2155204 10787339 ~ 10789709 (-)
G133790 NA other upstream 2201880 10834015 ~ 10859589 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034904 lpcat2 coding NC_007118.7 CM002891.2 35385472 ~ 35409027 (-)