CI01000026_07853925_07863410 (NR1H3)


Basic Information

Item Value
gene id CI01000026_07853925_07863410
gene name NR1H3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7853585 ~ 7863410 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_07853925_07863410.mRNA
ATGTCCACCCTTTCTACGACTGATATCACTGATGTTGGTCATGGGGACTCTCTGGGCTGTGCCAGCGAAGAGGGCCCTTCAGCAGCGACAGCAGAAGTGAAACAGGAGACTCTCAGTCAGACGGCCCCATACAGCACATCACACAATGAGCTGAACGACACGCTGCTCATGGAGCCCAACGACATCAAGATGTACCCCTCAGAGGATACCCCTGCACCAGAGGGTCAGCCAGTGAAGAGAAAGAAGGGCCCTGCTCCCAAGATGTTGGGAAATGAGGTGTGTAGTGTATGTGGAGACAAAGCATCTGGCTTTCATTATAATGTGCTGAGCTGTGAGGGCTGTAAAGGTTTCTTCAGACGCAGCGTGATCAAAGGAGCTCAGTACACCTGCAAGAACTCTGGCCGTTGCGAGATGGACATGTACATGCGCCGCAAGTGTCAGCAGTGTCGTCTGCGCAAGTGCAGGGAGGCGGGCATGCTGGAGCAATGTGTGCTGTCAGAAGAGCAGATCCGACTGAAGAAGATGAAAAAACAGGAAGAAGAGACGGCACGTACCTCTACAGTGGCAACACCCAGCCCTGCCCCTGAGATGCCCCCTCTGGCTCCTGAACAGCAGGAGATGATCGAAAAGCTGGTGGCCATGCAGAAGCAGTGCAACAAACGCTCTTTTCTTGATCGGCCCAAAGTCACTCCATGGCCACAGAGTCAGGACCCACTTAACCGAGAGGTTCGACAACAGCGGTTTGCTCATTTCACCGAGCTGGCCATCATGTCTGTGCAGGAGATTGTAGACTTTGCTAAACAGCTGCCTGGCTTCCTGGAGCTCACCCGAGAGGACCAGATCGCCCTGCTGAAGACCTCAACTATAGAGATCATGCTGCTAGAGACTTCTAGACGTTATAACCCAGCGATAGACAGCATCACCTTCCTCAAAGACTTCAGTTACAATAAAGAAGATTTTGCCAAAGCAGGGCTGCAGTTTGAGTTCATCAACCCCATCTTTGAGTTTTCAAAAGGCATGAATGACCTCCACCTGGATGAGGCAGAGTACGCTTTGCTCATCGCTATCAACATTTTCTCAGCAGACCGACCGAACGTGCAGGATCACGAGTTAGTGGAAAGACTACAGCAGCCATATGTGGACGCCCTCCACTCTTACATCAGAATAAAACGACCCAATGATCATCTGATGTTTCCCCGTATGCTGATGAAGCTGGTCAGCCTCCGCACACTGAGCAGCGTCCACTCAGAGCAAGTCTTTGCTCTGCGCCTCCAAGACAAGAAACTCCCGCCTCTGCTTTCTGAAATTTGGGATGTCCATGAGTGAGCCAGTGCTCCACCTCCAGGACAGAATGAGCCAGTGTCAGGGAAACATGGGTGGGCAGGGGTCGTCTACAGACAGAACACAGGGTCCTTAAGGGCTGAAATGTCTCCCACAGTCACGAGGAGCCTGATTTTGTTTCATTCTCTTCCTTGACTTAAATGTTTTGGATCCAGTGGTCAGTGAGCTGCTTCCTTTGAATGCGCTATTGATAGACTGTGTGGCCAGAAGTAGCTCAGGGACCGTTCAAAACAGGTAGTGGCTATTTGACCATCATTTGAGCTTGGGGTTCCTGATGGGTTTGGATTCAGAGACTTGCTTGCTAGAGTGAGCGGCCACAAATAAT

Function

symbol description
nr1h3 Enables nuclear receptor activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; lipid homeostasis; and regulation of intestinal lipid absorption. Predicted to be located in nucleus. Is expressed in several structures, including brain; digestive system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to several human genes including NR1H3 (nuclear receptor subfamily 1 group H member 3).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K08536 NR1H3, LXRA; liver X receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_07853925_07863410.mRNA True 1666 mRNA 0.51 9 7853585 7863410

Neighbor

gene id symbol gene type direction distance location
CI01000026_07786816_07835100 MADD coding downstream 18485 7785159 ~ 7835100 (-)
CI01000026_07738249_07739846 NA coding downstream 113697 7737842 ~ 7739888 (-)
CI01000026_07723366_07737315 DIS3L coding downstream 116270 7723114 ~ 7737315 (-)
CI01000026_07707119_07710156 CRYBGX coding downstream 142841 7707016 ~ 7710744 (-)
CI01000026_07681254_07684511 SMAD6A coding downstream 169074 7681026 ~ 7684511 (-)
CI01000026_07876455_07881355 TEX9 coding upstream 12930 7876340 ~ 7882737 (-)
CI01000026_08150334_08189089 NA coding upstream 286924 8150334 ~ 8189089 (-)
CI01000026_08254412_08284933 GALR1B coding upstream 391002 8254412 ~ 8284933 (-)
CI01000026_08294878_08297151 NA coding upstream 431273 8294683 ~ 8297603 (-)
CI01000026_08308439_08310023 NA coding upstream 444871 8308281 ~ 8310023 (-)
G131574 NA non-coding downstream 127497 7725496 ~ 7726088 (-)
G131571 NA non-coding downstream 138410 7714949 ~ 7715175 (-)
G131568 NA non-coding downstream 140845 7712523 ~ 7712740 (-)
G131516 NA non-coding downstream 322589 7528998 ~ 7530996 (-)
G131447 NA non-coding downstream 623458 7229880 ~ 7230127 (-)
G131594 NA non-coding upstream 94361 7957771 ~ 7958806 (-)
G131680 NA non-coding upstream 154783 8018193 ~ 8032978 (-)
G131668 NA non-coding upstream 303430 8166840 ~ 8174432 (-)
G131673 NA non-coding upstream 331517 8194927 ~ 8204389 (-)
G130256 NA other downstream 1536431 6275511 ~ 6317154 (-)
G129750 NA other downstream 3034303 4785885 ~ 4820249 (-)
G129658 NA other downstream 3480516 4367296 ~ 4373069 (-)
G129476 NA other downstream 4182701 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 4363082 3438795 ~ 3490503 (-)
G131742 NA other upstream 443366 8306776 ~ 8307707 (-)
G132575 NA other upstream 1523741 9387151 ~ 9387716 (-)
G132721 NA other upstream 1686620 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 2484783 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 2923929 10787339 ~ 10789709 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding CM030123.1 CM030123.1 6081535 ~ 6088041 (-)