G131447


Basic Information

Item Value
gene id G131447
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7229880 ~ 7230127 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU149486
GTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGGCGTGCTTTACACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTTCATGAAGCTCTCTACGCACTGTTCTTGAGCTAATCTGAAGGCCACACAAAGTTTGGAGGTCTGTAGCTATTGACTCTGCAGAAAGTTGGCGACTTCTGAGCACTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149486 True 248 lncRNA 0.51 1 7229880 7230127

Neighbor

gene id symbol gene type direction distance location
CI01000026_07095211_07103045 ANP32A coding downstream 126835 7094408 ~ 7103045 (-)
CI01000026_07027681_07028117 NA coding downstream 201280 7027297 ~ 7028600 (-)
CI01000026_06979917_07017829 ITGA11A, ITGA11 coding downstream 212051 6979917 ~ 7017829 (-)
CI01000026_06951574_06956778 MNS1 coding downstream 273067 6951410 ~ 6956813 (-)
CI01000026_06939775_06946613 TPH1B, TPH1, TPH1A coding downstream 283196 6939183 ~ 6946684 (-)
CI01000026_07296064_07324974 TLE3, TLE3B coding upstream 65476 7295603 ~ 7324974 (-)
CI01000026_07411794_07431870 UACAB, UACA coding upstream 181478 7411605 ~ 7431870 (-)
CI01000026_07465798_07466811 RXFP3.3A1 coding upstream 235300 7465427 ~ 7466994 (-)
CI01000026_07470871_07494876 PIAS1A coding upstream 240608 7470735 ~ 7494876 (-)
CI01000026_07519204_07523946 SKOR1A, SKOR1 coding upstream 288875 7519002 ~ 7523946 (-)
G131444 NA non-coding downstream 5012 7224428 ~ 7224868 (-)
G131442 NA non-coding downstream 7291 7222350 ~ 7222589 (-)
G131439 NA non-coding downstream 12169 7217453 ~ 7217711 (-)
G131424 NA non-coding downstream 42147 7182757 ~ 7187733 (-)
G131422 NA non-coding downstream 48709 7177932 ~ 7181171 (-)
G131516 NA non-coding upstream 298871 7528998 ~ 7530996 (-)
G131568 NA non-coding upstream 482396 7712523 ~ 7712740 (-)
G131571 NA non-coding upstream 484822 7714949 ~ 7715175 (-)
G131574 NA non-coding upstream 495369 7725496 ~ 7726088 (-)
CI01000026_07876455_07881355 TEX9 non-coding upstream 651782 7876340 ~ 7882737 (-)
G130256 NA other downstream 912726 6275511 ~ 6317154 (-)
G129750 NA other downstream 2410598 4785885 ~ 4820249 (-)
G129658 NA other downstream 2856811 4367296 ~ 4373069 (-)
G129476 NA other downstream 3558996 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 3739377 3438795 ~ 3490503 (-)
G131742 NA other upstream 1076649 8306776 ~ 8307707 (-)
G132575 NA other upstream 2157024 9387151 ~ 9387716 (-)
G132721 NA other upstream 2319903 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 3118066 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 3557212 10787339 ~ 10789709 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1115751 NA non-coding NC_048576.1 CM023230.2 79484344 ~ 79484547 (+)