G131743


Basic Information

Item Value
gene id G131743
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8298932 ~ 8299650 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU149846
TATAAACTGAATAATTCTGAAAATAGTAGAAGAAAATAGTAGCAAACAGAGTTATTTTTTTCTGTTTTAAAGTGCACTTACTGCAGTTTTGAACAATTAATGATCTGATTATTTTGCTATTATTAAAATGATGTAATAAGAAAAAGTCACTCAAACATATTGAAAGTCCATTGTCCACTGACTATCAAAGTAATACATGTTTTTTTTTTGCTTCTACAAAAGCACAAGCAGGCTGATTTTTTTATCTCAAAATAAAACTTTATTGATGAAAATTATGACCAAGAACTACTATAAACATTTGTGCTTTAGTTTGCAGCAATGGTCTGGTCAACCCAGGCACGGAGTTTGGTGACACGGGCGTACACACCAGGCGAGCTGGTTGAGCAGACGCTACTGCCCCAGGACACAATACCAACCAGAGTCCAGACTCCATTCTTCTGACAGACCAGAGGACCACCAGAATCACCCTGCAAGATGAAGCACCAGAGGCTCCAGCACAGATCATCAGATCAGTGATGTTGGTTCCCCAGTAACGCTTGCAGTCAGTGTTGGTCAGCAGAGGCAGAGCGGCCTGCTGGAGCAGGGGTGGGGTATTAGCAGCTGAAAGGACAGATTGGCAGCATTTTAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU149846 True 630 lncRNA 0.41 2 8298932 8299650

Neighbor

gene id symbol gene type direction distance location
CI01000026_08294878_08297151 NA coding downstream 1329 8294683 ~ 8297603 (-)
CI01000026_08254412_08284933 GALR1B coding downstream 13999 8254412 ~ 8284933 (-)
CI01000026_08150334_08189089 NA coding downstream 109843 8150334 ~ 8189089 (-)
CI01000026_07876455_07881355 TEX9 coding downstream 416195 7876340 ~ 7882737 (-)
CI01000026_07853925_07863410 NR1H3 coding downstream 435522 7853585 ~ 7863410 (-)
CI01000026_08308439_08310023 NA coding upstream 8631 8308281 ~ 8310023 (-)
CI01000026_08337806_08350476 HSD11B2 coding upstream 38080 8337730 ~ 8350818 (-)
CI01000026_08396549_08398206 NA coding upstream 95662 8395312 ~ 8398311 (-)
CI01000026_08501499_08526463 SLC12A4 coding upstream 201849 8501499 ~ 8526463 (-)
CI01000026_08591640_08612056 SLC6A2 coding upstream 291752 8591402 ~ 8612460 (-)
G131774 NA non-coding downstream 34478 8264184 ~ 8264454 (-)
G131768 NA non-coding downstream 48882 8248321 ~ 8250050 (-)
G131673 NA non-coding downstream 94543 8194927 ~ 8204389 (-)
G131668 NA non-coding downstream 124500 8166840 ~ 8174432 (-)
G131680 NA non-coding downstream 265954 8018193 ~ 8032978 (-)
G131766 NA non-coding upstream 16992 8316642 ~ 8317696 (-)
G131785 NA non-coding upstream 63037 8362687 ~ 8362902 (-)
G131787 NA non-coding upstream 64205 8363855 ~ 8364157 (-)
G131788 NA non-coding upstream 64875 8364525 ~ 8364877 (-)
G131804 NA non-coding upstream 103917 8403567 ~ 8403786 (-)
G130256 NA other downstream 1981778 6275511 ~ 6317154 (-)
G129750 NA other downstream 3479650 4785885 ~ 4820249 (-)
G129658 NA other downstream 3925863 4367296 ~ 4373069 (-)
G129476 NA other downstream 4628048 3670574 ~ 3670884 (-)
CI01000026_03439507_03490314 PDE3B other downstream 4808429 3438795 ~ 3490503 (-)
G131742 NA other upstream 7126 8306776 ~ 8307707 (-)
G132575 NA other upstream 1087501 9387151 ~ 9387716 (-)
G132721 NA other upstream 1250380 9550030 ~ 9550644 (-)
CI01000026_10347872_10351783 CEBPA other upstream 2048543 10347746 ~ 10351783 (-)
CI01000026_10788054_10788652 CD59 other upstream 2487689 10787339 ~ 10789709 (-)

Expression


Co-expression Network