G135282


Basic Information

Item Value
gene id G135282
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13728388 ~ 13728842 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU153825
AGCCAACATTTCTATGTGGGTTTTGATGGGCTGTTACTTTTGCCCTGCATGGGCAAGCCAAATGGGGCCCAGAGAAATTTGTCCATTGACTCCACATGGGCTCCATGTATGTGTAGCGAATCAGTACAGGTATTTAATTAATTTATGGGTGAAATATATGAATATAATAAATCATAAAGCTTTATGATTAATTATAATACATATACCGACCCGAGAGGGAATTATACATATATTGTGAATTAATTACAACGAATTATAATCAATCACATATATGATTAGTTCTGGTTTGATAATAATTTAGAGAAACTATTAGTTTGTCCAGCAAACCGTTAGCTCCTCATAGCCGATTATAAAAGGAAGGTTTTTCTCTGGCCACGAGAAAGACTTCCTATTCTAGCATCAATGCGTAAAGCAAGGATACTGGATCGAAACGTTAAAGTGACCTGGGTTTGTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU153825 True 455 lncRNA 0.36 1 13728388 13728842

Neighbor

gene id symbol gene type direction distance location
CI01000026_13705684_13706187 NA coding upstream 21826 13704984 ~ 13706562 (+)
CI01000026_13356327_13411385 ADAMTS18 coding upstream 316654 13356327 ~ 13411734 (+)
CI01000026_13318769_13335447 NA coding upstream 391863 13318083 ~ 13336525 (+)
CI01000026_13218786_13290069 PHKB coding upstream 438234 13218786 ~ 13290154 (+)
CI01000026_13019100_13028307 GPT2 coding upstream 699020 13018120 ~ 13029368 (+)
CI01000026_13837986_13903960 NA coding downstream 108897 13837739 ~ 13904262 (+)
CI01000026_14074647_14076746 NA coding downstream 345568 14074410 ~ 14077101 (+)
CI01000026_14178928_14180619 NA coding downstream 449408 14178250 ~ 14180732 (+)
CI01000026_14205243_14205597 NA coding downstream 473594 14202436 ~ 14206263 (+)
CI01000026_14282383_14282886 NA coding downstream 553303 14282145 ~ 14283069 (+)
G135279 NA non-coding upstream 9130 13719054 ~ 13719258 (+)
G135269 NA non-coding upstream 38274 13689844 ~ 13690114 (+)
G135256 NA non-coding upstream 61176 13666967 ~ 13667212 (+)
G135248 NA non-coding upstream 69268 13658819 ~ 13659120 (+)
G134870 NA non-coding upstream 311101 13415201 ~ 13417287 (+)
G135289 NA non-coding downstream 10625 13739467 ~ 13739684 (+)
G135294 NA non-coding downstream 12234 13741076 ~ 13741294 (+)
G135295 NA non-coding downstream 12624 13741466 ~ 13741705 (+)
G135305 NA non-coding downstream 46546 13775388 ~ 13775821 (+)
G135390 NA non-coding downstream 188516 13917358 ~ 13917571 (+)
G133542 NA other upstream 2251481 11476117 ~ 11477544 (+)
CI01000026_11241496_11246081 NA other upstream 2473315 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 2649308 11075784 ~ 11079080 (+)
G133192 NA other upstream 3566427 10159819 ~ 10161961 (+)
G132667 NA other upstream 4159228 9568739 ~ 9569160 (+)

Expression


Co-expression Network