XLOC_008527 (zgc:136683)


Basic Information

Item Value
gene id XLOC_008527
gene name zgc:136683
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 25059584 ~ 25060654 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017055
CAGGGCCATTGGAAAACCACACAGCTACAATGAAGATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGATGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGACGCTTTATCAGTGCATCGTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaaacagaTGCAGCTTTATGTGCTTGAAGTTCctcttgaagatttttttttacttttcttgaaacttttataagttttttttttgttctggaaTCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTGATGGTGCTTTTGAcaattttaatattcattaattaattttccttctgcttagtcccctGTTTATGAGGgggagccacagcggaatgaaccgttcattgtttatatgcaaatatattagatgtttaatgttaatgaatgggtttaaccattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGAaagtattcagttttttttttttacatttttgcagatatttgagATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcacgtacgagcaggcgcagccatttgaatctttttggctggagatttccgctctcattcacttcctttgatttttagacgttaaaaactgtttgttttgatgcttgatgttgcaatctgatattttcttaatatattattctgctttgtctatagagtcataaacacactagtttgtagagcaagtagtttgtctGTTTTCCGCTGTttaatattcctagtcatttctcccatagggcaCTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCAATATTAGGAGAAATTAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattctaaagtacttttacaatagtgtctctttaataaaaataaataaataaat

Function

symbol description
zgc:136683 Predicted to be located in membrane.

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description

Ensembl:

ensembl_id ENSDARG00000096818

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017055 True 1071 lncRNA 0.33 1 25059584 25060654

Neighbor

gene id symbol gene type direction distance location
XLOC_008525 BX908796.2 coding upstream 4854 25028482 ~ 25054730 (+)
XLOC_008524 NA coding upstream 6270 25007555 ~ 25053314 (+)
XLOC_008523 CR942805.1 coding upstream 97332 24962136 ~ 24962252 (+)
XLOC_008522 NA coding upstream 214671 24841291 ~ 24844913 (+)
XLOC_008521 gosr1 coding upstream 221929 24795473 ~ 24837655 (+)
XLOC_008528 BX908796.5 coding downstream 2652 25063306 ~ 25069355 (+)
XLOC_008529 NA coding downstream 34182 25094836 ~ 25095298 (+)
XLOC_008530 slc35f2l coding downstream 95467 25156121 ~ 25169613 (+)
XLOC_008531 NA coding downstream 147738 25208392 ~ 25209842 (+)
XLOC_008532 NA coding downstream 309913 25370567 ~ 25377494 (+)
XLOC_008463 BX663520.1 misc upstream 3807302 21252191 ~ 21252282 (+)
XLOC_008515 NA non-coding upstream 440940 24616570 ~ 24618644 (+)
XLOC_008533 NA non-coding downstream 335247 25395901 ~ 25399574 (+)

Expression


Co-expression Network