CI01000027_04725469_04727486 (EFNA1B)


Basic Information

Item Value
gene id CI01000027_04725469_04727486
gene name EFNA1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4723893 ~ 4728283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04725469_04727486.mRNA
ACATAAAAAAACACCGCTTTCCCACACAGAGAAAAGTCAGCAGGCTTAGCAAGGCATACACCCTGTCTTTTGAACACGCTGCTGATTAGAAGCTGTGCGAGACTGACTCTAATCTCTGCATTAAGCAGCGCTAATGAACGCAGTGATGTGTATGTTTACCCCCCATCTGAATAGACCGCAAGGCTGTTTAGACAGGTCGGCTAATGCTTACCGCAGAGGCACAGTGGGAAAGAGAGAGATAAAGGGGGGTGGAGTGGACAACGGGGGGGCCCGTCAGGAGCCTGTGTGTCTGTCCGTCATATAACCACGGCTCCCAATGGCAACAACAACAAATACATGTGCCAAAAGGGAGAAAGTGATGGAGCAAAGGGCATGCTGGGGGGGAAAGAGACTGCCTTGTGTTTCGTTGGCGGTTCACATGAGGGACGTGTGAGAAAATGTTATGGTAATGTGATTGGGTTTGAAGATTTTGGGTATATGGAAATGTGATGTCGAAGAAGTAACAGCAGTCACAAAGCTAATCAGCCAATCAGATACTTTATGTGGTTTGAACAGTGGTGTCTTATGGCCACTGTGGGGGTGAATCTATTAAGAAAATATTCAGATGTGTGTTATTCAGAAATGTTAGACAAATTCACAATAATAAATCAATGACAACATGAAAGCAAAGACACAGAAAAAACAACATACAGAAAGGCCTGTGGATTTGTCATTTGTACATCTGGTAACAGCAGCAGGGAAGCTTAGATCAGACGAAAATGAGAAAAGCAAATGAGACGACAATAAAAGGAGAGACAGACAAGAGAGGAGGCTGTAAAAACACGTAGAGCCAATTCAAAGAGCCAGGCTGTCTAAGCGGCTCCATCTCTGTTACCAAGAGAACAAGGAAGAGGTTGTGATGGATTACAAAGTCAAAGGTTTTTAAGATTTCACAAAAAAAAAGCTTTTACAAAATGCATTTTAGAACTGTCATAATTAACATGTTAACAAAATATGTTGAAAATATGTTTTAAAAAAAGTATAATAATCTGTCTTGAAGCAATATTATTGCTTTAATAAGTAAGTAATAAATCTGACTTGAATTGAAAATGTAAAAAAAAAAAAAAAAAGTATATATTTTCCAGATATTATGCAAGTAATTTGCTTTGGCTTCAGTGCTTTTGTTATTTAACCACCTTTTTTTTTTTTTTTTAATGTCATTAGTTAATTTTTATAGCATTTTGTCTATTATAATGTCATTCTGAATATTTATTTCATGCAGTCTAAAAGAGGCTTTGTACTTAAAAATGTACAACAGCTGTTATATTGTAAAATATATTGGAAAAGGGGTGCCCCGTAAGAGGTTTCTCTCAATCATATTTGGGTGTCAAAACGTTAGCTGAAAAAAGGAGATTCAAGTTCATTCTAAAATGAATTAAGTGGACAGAAAAAGTTATAGAGGTTTACAAAACAAAGCAAAATACGGATGGAAATCAAGTCAAGAGAAATGGATTAGAAGGAAATCTTTTCATGAAGGACTTGAAGAAAACAATTGGAACATTTCCCTATACACTCCTTCACCCAATGTGACACCGAAATGCAGACTAGAAAGAAAAGAAAAAGAAAAGAGGGATTTTACAGGGTGTTTCACTCAAATAAAAGCAGCAGTTTCCTATGGGATGATTACACCGTGGAGGTCCGCATTAATGACTACCTAGACATCATCTGCCCTCACTACACACGTGGCGAGATCCCATCCCAGGAGGCCGAGCGGTACGTGCTCTATATGGTGGAGCTGGAGGACTATGAGAACTGCAAGCCACAGTCCTTCGACCAGCTGCGCTGGGAGTGTTCCAGACCCTTCGCTCCTCACGCACCAGAGAAGTTCTCTGAGAAGTTCCAGCGCTTCACTCCCTTCACTCTGGGCAAGGAGTTCCGCCAGGGAGAGAGTTACTACTATATTTCCAAACCTCTTCACCATCATGGGCAGGAGTGTTTGAGACTGAAGGTGGATGTAGTTGGACCTCATGGTTCCAAGAACAAGAACAAGAAAAAGACAGTTGAGAAGGAAGATGAGATGGAAGTAAAGGCTGCTGGAGGAGTACATAACCCATCAAACAGGCTTCCAGCAGATGACCCTATTGCCATGATCCCAGTTGTGCAGAGGAGCGTGGGCAGTTCAGGCGTTCGTGTGGCACCCGTCTCAAGTTTCGTCACGTTGATCTCTATACTCATCTTTCTGCTCCTCCACTGAGCCTGATATAAGACGACTTTATGGACGCTGGTCCGTTAGGACACAACAGACTTTAAAGCCGGTGCTGGTTACCGGCTCTGAAAATAGATTTTATACGAAGAATTTTTATACAAACTGAAGTTTTGGTGCTGGTGTGCAAGTTGCTGAGTGACGTGTTTGTATTTGTGTTTGTGAGAGTGACGTGACCAGAGAAAGGTGTTTTTGAAGAACCTTCTCTCTTTTTGAAGAGTATTTATCGTTCTACAATTCTGTTCCCCCATCAGCTCTTTTTATTTTACTTTTGTAGACCATATGTGCTCCTGATTCATCACAAATGTATTTACCAATGTGATTCAGAACAAACCTTAAAGTTTGGAGAGCTGTAACCATCAGCTGTATAACTGGAATTGTGATCACAAGAAAGAACAATAGGCTAGATGTTGTGTTTGATAGAGACCTTTGGTCTACTCTGCTGATTTGAGCCAGAGATCACAGGATTTATCTTAAAACTGACCCTGACGTTGCACCTTAAAGAATTGATGTTTGTGCATATAACAGTGTTTGTAAATCTTGAACAGTAATCGAACAGTTTCCTGTGTTTTGGATCTCGTGTTGCTGTAGTTTCAGTTGGTTTCTGTGATGTAATGTGAACACACCCTACAAAATGTACTGGCATTATGTTATAGATGAGATCAGATTTGTTTTCATTCATAACATTTGGTTTCGAACAGGAATGATTGGTTGTGCTGTTTGTGAGTGAGAGAGAGAGAAGCTGGCCTTCTGACAGAGAGTACGAAAGGCACAATTCAAATGGTTTA

Function

symbol description
efna1b Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; nervous system; optic vesicle; and periderm. Orthologous to human EFNA1 (ephrin A1).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04725469_04727486.mRNA True 3030 mRNA 0.40 5 4723893 4728283

Neighbor

gene id symbol gene type direction distance location
CI01000027_04713891_04717190 NA coding upstream 6534 4713780 ~ 4717359 (+)
CI01000027_04655825_04667764 NA coding upstream 56026 4654783 ~ 4667867 (+)
CI01000027_04551022_04551875 NA coding upstream 171900 4550712 ~ 4551993 (+)
CI01000027_04537765_04549872 NA coding upstream 173964 4537342 ~ 4549929 (+)
CI01000027_04497623_04499224 NA coding upstream 224545 4497623 ~ 4499348 (+)
CI01000027_04768212_04770488 KRTCAP2 coding downstream 39929 4768212 ~ 4770687 (+)
CI01000027_04774573_04774740 NA coding downstream 46290 4774573 ~ 4775489 (+)
CI01000027_04777135_04777760 NA coding downstream 48204 4776487 ~ 4779338 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding downstream 107706 4835989 ~ 4851178 (+)
CI01000027_04860802_04872130 NA coding downstream 132519 4860802 ~ 4872566 (+)
G140597 NA non-coding upstream 14898 4708788 ~ 4708995 (+)
G140596 NA non-coding upstream 15387 4708225 ~ 4708506 (+)
G140587 NA non-coding upstream 31189 4692134 ~ 4692704 (+)
G140522 NA non-coding upstream 52416 4671107 ~ 4671477 (+)
G140512 NA non-coding upstream 210308 4513410 ~ 4513585 (+)
G140455 NA non-coding downstream 5425 4733708 ~ 4736668 (+)
G140435 NA non-coding downstream 8611 4736894 ~ 4822645 (+)
G140436 NA non-coding downstream 48921 4737398 ~ 4774262 (+)
G140475 NA non-coding downstream 96657 4824940 ~ 4825988 (+)
G140633 NA non-coding downstream 104729 4833012 ~ 4833260 (+)
G138953 NA other upstream 1203828 3502072 ~ 3520065 (+)
G138915 NA other upstream 1237246 3484387 ~ 3486647 (+)
G138515 NA other upstream 3047033 1664408 ~ 1676860 (+)
G138436 NA other upstream 3216077 1506961 ~ 1507816 (+)
G138290 NA other upstream 3724712 995970 ~ 999181 (+)
G140440 NA other downstream 52134 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 320640 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 341069 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 343779 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location