CI01000027_04768212_04770488 (KRTCAP2)


Basic Information

Item Value
gene id CI01000027_04768212_04770488
gene name KRTCAP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4768212 ~ 4770687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04768212_04770488.mRNA
TTCTTAACCCACAATTACAGGCTTTCAATAACCTGGAAAACCTTGTCTTCGGTAAAGGCTTCCAAGCCAAAATCTTCCCAGAGATTGCCGTGTGCCTGTGCCTCTCTCTGTTTGCGTCTGGTTTGGTGCATCGTGTGTGCGTGACAACGTGCCTGATCTTCTCTGTGTTTGCACTGTACTACATCAACAAAGTGTCAGCAGCTCTTTACCAGGCAGCACCTGCTCCAGCTCCTGCCAAACCCACCAGCAAGGGCAAAAGGAAGAACTGAAGCACTTACGACATCAGTCACCCATTCAGTCACCACACCGCTGCAATCTGATGTGTTTGCCAACAGCAGACTTTTTTTTTTTTTTTATCCATTCCATCTACAATGAAAGACAACTAAATTAATTTGTCATACCAGTCATAGATGTGTGATTTTTGGTTCTGTTTACATACAAAAATGCTTTTGTTTAAAGGGTTTGTTA

Function

symbol description
krtcap2 Predicted to be involved in protein N-linked glycosylation via arginine. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; cleithrum; liver; and polster. Orthologous to human KRTCAP2 (keratinocyte associated protein 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04768212_04770488.mRNA True 468 mRNA 0.43 3 4768212 4770687

Neighbor

gene id symbol gene type direction distance location
CI01000027_04725469_04727486 EFNA1B coding upstream 39929 4723893 ~ 4728283 (+)
CI01000027_04713891_04717190 NA coding upstream 50853 4713780 ~ 4717359 (+)
CI01000027_04655825_04667764 NA coding upstream 100345 4654783 ~ 4667867 (+)
CI01000027_04551022_04551875 NA coding upstream 216219 4550712 ~ 4551993 (+)
CI01000027_04537765_04549872 NA coding upstream 218283 4537342 ~ 4549929 (+)
CI01000027_04774573_04774740 NA coding downstream 3886 4774573 ~ 4775489 (+)
CI01000027_04777135_04777760 NA coding downstream 5800 4776487 ~ 4779338 (+)
CI01000027_04835989_04851147 SNX27.L, SNX27B, SNX27, SNX27A coding downstream 65302 4835989 ~ 4851178 (+)
CI01000027_04860802_04872130 NA coding downstream 90115 4860802 ~ 4872566 (+)
CI01000027_04887494_04956477 KCNN3 coding downstream 116629 4887316 ~ 4957488 (+)
G140455 NA non-coding upstream 31544 4733708 ~ 4736668 (+)
G140597 NA non-coding upstream 59217 4708788 ~ 4708995 (+)
G140596 NA non-coding upstream 59706 4708225 ~ 4708506 (+)
G140587 NA non-coding upstream 75508 4692134 ~ 4692704 (+)
G140522 NA non-coding upstream 96735 4671107 ~ 4671477 (+)
G140436 NA non-coding downstream 6517 4737398 ~ 4774262 (+)
G140475 NA non-coding downstream 54253 4824940 ~ 4825988 (+)
G140633 NA non-coding downstream 62325 4833012 ~ 4833260 (+)
G140454 NA non-coding downstream 102428 4873115 ~ 4874023 (+)
G140640 NA non-coding downstream 111393 4882080 ~ 4882366 (+)
G138953 NA other upstream 1248147 3502072 ~ 3520065 (+)
G138915 NA other upstream 1281565 3484387 ~ 3486647 (+)
G138515 NA other upstream 3091352 1664408 ~ 1676860 (+)
G138436 NA other upstream 3260396 1506961 ~ 1507816 (+)
G138290 NA other upstream 3769031 995970 ~ 999181 (+)
G140440 NA other downstream 9730 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 278236 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 298665 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 301375 5071693 ~ 5073136 (+)
G140862 NA other downstream 941925 5712612 ~ 5712702 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009881 krtcap2 coding NC_007127.7 CM002900.2 23326085 ~ 23392266 (+)