G138475


Basic Information

Item Value
gene id G138475
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1532970 ~ 1533422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157320
ATTATTTAAACCTTTATTGTGTCTTAAAAATGGCGGTTGCTAACAAGTTGCTAAAAGGGACTACATCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTTGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACATCGCAGATCATAATCAGCGAGCATGTTTTTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACGTTGATCCACGACCATGGTGTGCTGTAGTCTGTTTATAGCCTACTGTTAGCTTTTTATATCTGACGACTTTATTTAGGCTTCAAAATGTATAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGTCTATGGGAAAAATGCATTGGCTTTCGATCGAGGGAACCCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157320 True 453 lncRNA 0.37 1 1532970 1533422

Neighbor

gene id symbol gene type direction distance location
CI01000027_01519267_01519711 AFP4, APOA2 coding upstream 13194 1519267 ~ 1519776 (+)
CI01000027_01413155_01416305 NA coding upstream 115312 1413101 ~ 1417658 (+)
CI01000027_01176638_01185141 NA coding upstream 347663 1175836 ~ 1185307 (+)
CI01000027_01162273_01168513 NA coding upstream 364313 1162273 ~ 1168657 (+)
CI01000027_01153787_01158632 NA coding upstream 373969 1153787 ~ 1159001 (+)
CI01000027_01543335_01543974 NA coding downstream 9913 1543335 ~ 1544229 (+)
CI01000027_01546280_01571152 NTRK1 coding downstream 12321 1545743 ~ 1571220 (+)
CI01000027_01572250_01574108 NA coding downstream 38471 1571893 ~ 1574410 (+)
CI01000027_01767031_01767683 NA coding downstream 233185 1766607 ~ 1767863 (+)
CI01000027_01811625_01827803 RGL2 coding downstream 276335 1804199 ~ 1828182 (+)
G138474 NA non-coding upstream 3044 1529721 ~ 1529926 (+)
G138430 NA non-coding upstream 70151 1461181 ~ 1462819 (+)
G138455 NA non-coding upstream 72514 1460240 ~ 1460456 (+)
G138454 NA non-coding upstream 72986 1459767 ~ 1459984 (+)
G138453 NA non-coding upstream 73400 1459295 ~ 1459570 (+)
G138491 NA non-coding downstream 48611 1582033 ~ 1582333 (+)
G138494 NA non-coding downstream 59853 1593275 ~ 1596468 (+)
G138508 NA non-coding downstream 99402 1632824 ~ 1647449 (+)
G138514 NA non-coding downstream 128463 1661885 ~ 1663849 (+)
G138515 NA non-coding downstream 131869 1664408 ~ 1676860 (+)
G138436 NA other upstream 25154 1506961 ~ 1507816 (+)
G138290 NA other upstream 533789 995970 ~ 999181 (+)
G138247 NA other upstream 663395 855388 ~ 893121 (+)
G138238 NA other upstream 701287 829774 ~ 831683 (+)
CI01000027_00391159_00499309 CSMD3 other upstream 1104294 390683 ~ 499760 (+)
G138915 NA other downstream 1950965 3484387 ~ 3486647 (+)
G138953 NA other downstream 1968650 3502072 ~ 3520065 (+)
G140436 NA other downstream 3203976 4737398 ~ 4774262 (+)
G140440 NA other downstream 3246995 4780417 ~ 4785660 (+)

Expression


Co-expression Network