CI01000028_00525538_00533862


Basic Information

Item Value
gene id CI01000028_00525538_00533862
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 524647 ~ 535245 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_00525538_00533862.mRNA
GCTGAATGACGCCCCAGTGAGAGGCTTTGAGGAGGATGTCGGTAACAAGACCACTTTGCGTCTGTTTTACCCCGAATCCGCCTCCTATAATCCGGGTGTCCACAATGACCCGGACACCCTGCTGGTCCTGGTTCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAAATTCTATATGACGAGAAGAGGGTTCGAAAGGGTTTCTGGAAGCCTCCTCCCCAGATCTGGCTCGGCCAGGCCAGTCAGATCCGTGTCCTGGACCCGTATTTTCTTCGCCTAACAGCCAGCAAGCTTCTGCAAATTCCTTTGCAACCACGCCGACAACAGAAACCAGTCCATCCCACTACTGGTCTTCTGGCAGTATTTGTAGCACTAAACTACTGTGATGTTGTGCACCTTGCTGGATTTGGATATCCAGAGTTCCGAAACCAGAAACAGCCCATCCACTATTATGGACAAGAAACAATGAAGTCAATGAAGAATTCCTACCATGATCTCAACCAAGAGGCTCAAGTTCTGAAGAGACTGGAAGACCAGGGGGCCATTTTATATCTTCATCCTCATTCTTGACACCCAACAGGAGCACATGTATATGTGTTCACACGTAAAAACATACATGAACGCATGTAAATACTAGAAACACTAGAAACAATATCTTTGGATATTCACACAAGCCTGGATTATATCCAGCTCTCACACTGCAGAGCTGTTAGTTGTTTCTGTAAAATTTCTGCATTTCTCTGTGATTTCCAAATTTTTGTCTGACCTCACATATTTATAATTAACATTTTTTTTTTCCTCTTTTTCTGTTGTTTCCTTTTGGGAACTTTTTTTGAAATATCACCACTGGATATTTTGCGAACTTCTTAAGTATTTA
>TU164197
ACAAGGTATGGCTCTTTAAAGTTTAGGAAGTTGTACATTCTTGAACGTTTAATGAAAAATCACCCCTCCCTTCCCAATGGCGGATATTTTGGCAGTTAATTTCAGATTGTGTTTTTGTTATTTGTTTTCAAGAAGCCTCTGCTAACGTTGATAATGTTACATCACAGGCTTGGCTCTGCCTCAAGAATGTCCGCTATTGTAATCCAAACACTTTAGGTTGACCTGGTCTGCAACACATTCATAGAGTGAAACACACACACAGTTTACACTGAGATGTATCGTGGCCTTCAAATCCTCCTACTTACAAGCTCGGAGGTCGTAATTATGAGGTGATGTACGAATACATTTTATCTGGAAAAAATGGGTGTGTTCGGCAATTTCATATTTCTTCTCTCTTTTTAACATACTGCCAAAGTCAGGAAGCTTTTTTAGCACTAGTATAGCAAAATCAAGGGCAAAGAGTGTAAATAAGGTCTGTAATTGACTTTATTATGTATTTTATTGTTCTCTTGCTGCCATAGGAACTAACGGGAAATGCAATTTTGGCTGCACAAGCCTGTCACCTCATAAATCGGCTTAATGAGTAGTGTTTTCTGGCAAGCTTTACCACTATTCATCATCAACAGTGCACAAATTGTGTGCAAACTACATTGTACGGTCAATATTCACAAATTATGACCAGCACCAATTTATTTCTGCTGTTATTCCTTAACTGCACATTCTCAACTCTGAAAACTGCATTATTGTGGTGCACTGCATTGATATTAAAGCCTACGCACTCATGTTATCAATGCTTATTCCGACATGATTTGAGGTCAACATGTATATCCAGCTATGATTTGACCTTTGACATTAATATAAATCGCTTTTGTCCCCCACTTTGTGTATCAGGCTGAATGACGCCCCAGTGAGAGGCTTTGAGGAGGATGTCGGTAACAAGACCACTTTGCGTCTGTTTTACCCCGAATCCGCCTCCTATAATCCGGGTGTCCACAATGACCCGGACACCCTGCTGGTCCTGGTTCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAAATTCTATATGACGAGAAGAGGGTTCGAAAGGGTTTCTGGAAGCCTCCTCCCCAGATCTGGCTCGGCCAGGCCAGTCAGATCCGTGTCCTGGACCCGTATTTTCTTCGCCTAACAGCCAGCAAGCTTCTGCAAATTCCTTTGCAACCACGCCGACAACAGAAACCAGTCCATCCCACTACTGGTCTTCTGGCAGTATTTGTAGCACTAAACTACTGTGATGTTGTGCACCTTGCTGGATTTGGATATCCAGAGTTCCGAAACCAGAAACAGCCCATCCACTATTATGGACAAGAAACAATGAAGTCAATGAAGAATTCCTACCATGATCTCAACCAAGAGGCTCAAGTTCTGAAGAGACTGGAAGACCAGGGGGCCATTTTATATCTTCATCCTCATTCTTGACACCCAACAGGAGCACATGTATATGTGTTCACACGTAAAAACATACATGAACGCATGTAAATACTAGAAACACTAGAAACAATATCTTTGGATATTCACACAAGCCTGGATTATATCCAGCTCTCACACTGCAGAGCTGTTAGTTGTTTCTGTAAAATTTCTGCATTTCTCTGTGATTTCCAAATTTTTGTCTGACCTCAC
>TU164195
ATCAGGCTGAATGACGCCCCAGTGAGAGGCTTTGAGGAGGATGTCGGTAACAAGACCACTTTGCGTCTGTTTTACCCCGAATCCGCCTCCTATAATCCGGGTGTCCACAATGACCCGGACACCCTGCTGGTCCTGGTTCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAAATTCTATATGACGAGAAGAGGGTTCGAAAGGGTTTCTGGAAGCCTCCTCCCCAGATCTGGCTCGGCCAGGCCAGTCAGATCCGTGTCCTGGACCCGTATTTTCTTCGCCTAACAGCCAGCAAGCTTCTGCAAATTCCTTTGCAACCACGCCGACAACAGAAACCAGTCCATCCCACTACTGGTCTTCTGGCAGTATTTGTAGCACTAAACTACTGTGATGTTGTGCACCTTGCTGGATTTGGATATCCAGAGTTCCGAAACCAGAAACAGCCCATCCACTATTATGGACAAGAAACAATGAAGTCAATGAAGAATTCCTACCATGATCTCAACCAAGAGGCTCAAGTTCTGAAGAGACTGGAAGACCAGGGGGCCATTTTATATCTTCATCCTCATTCTTGACACCCAACAGGAGCACATGTATATGTGTTCACACGTAAAAACATACATGAACGCATGTAAATACTAGAAACACTAGAAACAATATCTTTGGATATTCACACAAGCCTGGATTATATCCAGCTCTCACACTGCAGAGCTGTTAGTTGTTTCTGTAAAATTTCTGCATTTCTCTGTGATTTCCAAATTTTTGTCTGACCTCACATATTTATAATTAACATTTTTTTTTTCCTCTTTTTCTGTTGTTTCCTTTTGGGAACTTTTTTTGAAATATCACCACTGGATATTTTGCGAACTTCTTAAGTATTTAATAAAATGAAATGAAATCTTGTTTTTCATGGGCAAGATTTAATGGAGAACAAATGGAGACTTGTGCTTATATCTCCTGCTTCTCAGATGTTTCTCCTAAGAAAAATATACTAGTGATCACAAAGGTGTCTCCTATATGGCCTTCTTCTTCAGTTTCCATATTCAAAATCTGCAAAGGACAAGTTCAGATTCAAAACCTTGTTTTCAGATAACCAAATCTGAAAGTTAATAGAATTTGCAAGCAAAAAAATGTGCTCTGTATTCTTGGTAAAGAAGTCACATAATCTAGTGCACTTTCGAAATTAAATTTTTAACACTTATGAACTCAATAGAAGGGTAAATATCAACTAAACTTTTAAAGTGAGTCTCTTTAATTTTGTGTTGAGTTGGACATTTCAAATAAGAGGTTCTATATTTAAGATACAATTATCCTCTGAGCAGCAGTGATTGTGAAGTCATCACCAGAATATCTGCAGCAATACCTCACACAGCCTGAAGAGGGCGATTCATCTACATGACTGACGGCATGAGCGAGGTCTGTTTACAGGGAGGGTGAAACACGAGCCTACATGCTTGCACTGAAGCACATCATACGTACATGATGGCCGTATGTTCACTTTCTGCTTTATGGTTATTGTTTCCATTTGAAATGGAGAGAGCTGCCTTTTTGTTTGAGTCATTTTCATTACTCAGAGCTTCACAAAGGAAGGAACATCTGGAGTTTTGTCAGGCGAGAGAGAGATAATGTTCATATGTGCCCGAATACTCTGCCAGACTGCAAGGCCTAGTTGCTTACAGCCCTTAATGTGAGTGATGTTTGGTCTTGGCAGCCCAAAAACAGCAAAAAATACCTAGTGAGAGGTGAACTTTTGACACAAAGACTGTTCTAGAAGTTCTCCTTGTTTTGGTCAAATTCTGTGGCAGCAACCCATATTTTGCTGAAAGGCAATCCCACAACAGATTGCACAGAGTTCCATGGATAAATGAATCTAAAATGGTGGACAAAGTGTGAGAATGATACACTTATATTTCATTCAATATTGTATAGACAAAGAAATAGTCAGTACATTAATAAAA
>TU164201
ATCAGGCTGAATGACGCCCCAGTGAGAGGCTTTGAGGAGGATGTCGGTAACAAGACCACTTTGCGTCTGTTTTACCCCGAATCCGCCTCCTATAATCCGGGTGTCCACAATGACCCGGACACCCTGCTGGTCCTGGTTCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAAATTCTATATGACGAGAAGAGGGTTCGAAAGGGTTTCTGGAAGCCTCCTCCCCAGATCTGGCTCGGCCAGGCCAGTCAGATCCGTGTCCTGGACCCGTATTTTCTTCGCCTAACAGCCAGCAAGCTTCTGCAAATTCCTTTGCAACCACGCCGACAACAGAAACCAGTCCATCCCACTACTGGTCTTCTGGCAGTATTTGTAGCACTAAACTACTGTGATGTTGTGCACCTTGCTGGATTTGGATATCCAGAGTTCCGAAACCAGAAACAGCCCATCCACTATTATGGACAAGAAACAATGAAGTCAATGAAGAATTCCTACCATGATCTCAACCAAGAGGCTCAAGTTCTGAAGAGACTGGAAGACCAGGGGGCCATTTTATATCTTCATCCTCATTCTTGACACCCAACAGGAGCACATGTATATGTGTTCACACGTAAAAACATACATGAACGCATGTAAATACTAGAAACACTAGAAACAATATCTTTGGATATTCACACAAGCCTGGATTATATCCAGCTCTCACACTGCAGAGCTGTTAGTTGTTTCTGTAAAATTTCTGCATTTCTCTGTGATTTCCAAATTTTTGTCTGACCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_00525538_00533862.mRNA False 878 mRNA 0.44 4 525538 534169
TU164197 False 1663 lncRNA 0.42 4 524647 534063
TU164195 False 1959 lncRNA 0.40 4 525533 535245
TU164201 True 777 lncRNA 0.46 4 525533 534063

Neighbor

gene id symbol gene type direction distance location
CI01000028_00480248_00480873 NA coding upstream 43882 480248 ~ 481656 (+)
CI01000028_00408392_00408646 NA coding upstream 116753 408256 ~ 408785 (+)
CI01000028_00322030_00328679 ESRRD coding upstream 196821 322030 ~ 328717 (+)
CI01000028_00291055_00310156 NA coding upstream 215382 291055 ~ 310156 (+)
CI01000028_00230581_00236490 NA coding upstream 288065 228728 ~ 237473 (+)
CI01000028_00590268_00592921 NA coding downstream 55769 589938 ~ 593521 (+)
CI01000028_00612606_00613724 KCNJ1A.3, KCNJ1A.1 coding downstream 75831 610000 ~ 614343 (+)
CI01000028_00657528_00691252 NA coding downstream 123317 657486 ~ 692081 (+)
CI01000028_00710081_00723407 ETS1 coding downstream 175912 710081 ~ 723746 (+)
CI01000028_00748991_00751030 NA coding downstream 214442 748611 ~ 751269 (+)
G144599 NA non-coding upstream 52264 473002 ~ 473274 (+)
G144598 NA non-coding upstream 53198 472104 ~ 472340 (+)
G144592 NA non-coding upstream 57666 467672 ~ 467872 (+)
G144591 NA non-coding upstream 57995 467237 ~ 467543 (+)
G144576 NA non-coding upstream 105369 419717 ~ 420169 (+)
G144611 NA non-coding downstream 23504 557673 ~ 558076 (+)
G144641 NA non-coding downstream 90302 624471 ~ 626011 (+)
G144668 NA non-coding downstream 196264 730433 ~ 730792 (+)
G144669 NA non-coding downstream 196722 730891 ~ 731254 (+)
G144673 NA non-coding downstream 266000 800169 ~ 809707 (+)
CI01000028_00525538_00533862 NA other upstream 3607 524647 ~ 535245 (+)
G145843 NA other downstream 2488977 3023146 ~ 3024220 (+)
G147462 NA other downstream 4424534 4958703 ~ 4989838 (+)
G147636 NA other downstream 4681921 5216090 ~ 5216611 (+)
G147693 NA other downstream 4906285 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 6935723 7469543 ~ 7471432 (+)

Expression


Co-expression Network