CI01000028_03677140_03686568 (DDX6)


Basic Information

Item Value
gene id CI01000028_03677140_03686568
gene name DDX6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3674444 ~ 3686976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03677140_03686568.mRNA
TTATAAAAATGGGTGTTTAGTGATTTAGACCATTAATTGTGAATCTTTAAGGGGTTCATTCGCGTGCGGCCTGTGTGGACGCAAAAGCTAATGAGCTCTAGCACAGTGCTAATATTTTTTTTTTTCTCCACACAGTTCAAATATTTAACTTTGCTTCTTACCGAAGCAACATGTCAAAATGGTTTTATTATAGCTGTATTCCCTAACTGTTTAAACGTTATCCGACTGTTAAATTCTGACTAATATGAAGCCGCAATGGATAGCTGCTTAGCTAAACATTAGCATTAACTGCGTGACAGCGAGTTTCACGTTGTGAATGTGTTGAAACAAGACGGTTAAAATTTAATAGTGTTAACTAAATAAAGACAGAGTAACATTGGTTACATTGAGATACATTGGTTTACCGTGTTCCGTTAGTGAGTTTAGTGAACTATGGACTTTCAGTTAACTTTAGCTAACTACCCTTTACCTTGTCTTTAATTTTAACTAGATTCCACAGCTGTTTAGTCAAAGTGCTACTGCATCTGTTTTACAAACACACAACATCAGCGAAGTCACCATATTAATGTCTATGTAATCTGAAAATGGTTTAAGTACCGGAGAGGCTGTTTTAATATGAGGCCTATCGTGTTGACTTTGTGCCAGGTGCTGCTGCCATCATTATTGAGGTCAGATTTGACATCTAATAAGGTTTATGGTCCTTGTTCGTATGTTCAAACCATGCATGGGTATTTTTTTTTTTTTTTTTCCCCTCCTCCTTACAGAGGCTTTACCAGATTGATTACGAGTGATCTTAGTATGCCACTTCTGCCAGAGCTTTTCTGTTTATAATTCCTTCTCCAGTGTGTTAACTCTTTTGCTGCTGTAACATTACAATTTAGTGTAAATGTGTTGTGTTGACAGCGCACTACTCTATTACTACTCAAATTGGTCTGTATTAATGATAGGCAGATTAGTCAAAACACGTTTTGCCATTTTGAGAAGGCAACAGAGGTGATAAAACCTCACTTGTCACTTTCAAAATGTAGTAACCGCTTTGTCAAAGAATTGTGCACGTCTTTTTTGTGATTTTGTGAATTAAATATTGTGTAAATATTTTAAATGGTTAAATAGTTTAATATAAATCATGTCTAATCAATTGAATTCATAAAAATGTATCCTAATTAAAATATTTATTTATTTTTTTACAATACTAAGGTGTTTTTAACAATTCAGAATTGATTCGAAAGAGAATCTGCGATGACTTCAGAAGATGCAACATCTGGATCAACACGCACATTCACATTCTATAAATCCTAATTATTGTTAATATGTAATTCATTTTTCCAGGAGCTCTTTGCTTCTACCTCCAATTACATTGCTAACAGTGATTGTATGTTAATCGCCTAAATTATTACATTATTAGCTAACTGCAGTCTCCAAATTGTAATGTTGACATGCATTCTCTGTAAAGCTGCTTTGAAACGATATGTATCGTGAAAAGCGCTATACAAATAAATGTGAATTGAATTGAATTGAGAATCGCGAAACAAATGGAAAATATCAGAATTGATCCAGAATCATTTCTTGATGCACGATGCATCAATGTATTGTCCCAGCCCTATTGATTAACATTCATGACACAGAAAGCAGCAGGAATATAGGCTGCTGTCACTTTAAGATCGAATGCGTGGACCCAAAATACTATTACACATCTGGTTTTCTTTCTTAATTTAGTTCACCTAAGCCATAAACGACTGTTTATGGGGATATTTGATGTTTTTAATGTTGTCTGTTTAAATTCTGGATTTGATTTAGAAATCAATCCGTGGTAATCAAATGAAGGTCTAAAAGCATTTTAATTCAATCTTTTAAAATGTAATCTTAAAGATTACATCAAATAGTCAAAGTGCTATTGTATATTGTGTAAAGTGTGCTTTTAAAATAATCAAGTTTTGTCTTTTTTTTCCTGTTTTAAGCAATTTACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCATAATGTCAGCCAAACATGGACCCCGTGTCCGTTGCACCACGAGGGGGGGTATTTTATTTCCTATCAAAACACAGAATTTTTTTTTTTTCTAAATGTGATACAAGAATGATCCGTTAAGGTAATGTTTTTGTAAAGTTGTGTTAATAAGAATCTATTCGGGGAAATTACCCCTGTCCTACATAAATGGTATCGGCGTTGACTAAAATCTTGATTGGTGGTTTTGTTTGACATTTCATGATATGTGCTTTAAGATGCTCTTTCTCTCACACACAGGTGGAAAATAGTTGATGTTGACTAATTTGAGAGAAAGGAATGGACAGAATCATTGAAAAGACTAACACTGGCTTCCTGGCCCCTGGTCTGTGAAACTTTCCTTTTGCAGAGGAAAGATTCACTCATTCATGGAAGGATAATTGAAGCTAATCTCCCTGCTTATAATATCTGTGACCTGTTGCTTGAGTGACATTCATATTGAGATGTTCCACAAGAGACTTGCATATTGAGGAACAAAGAACTAGTAAAAATATTGCTTTAACTTTTTTTTTTTTTCGTGTGCTTTGGACACTGCGAAAGCTGTGGGAAGGACAACTTGTGAATTGTTTTGCAAGCCCATCAAGATAGTGTTATCTCCACTGTTGTTTGTCACTCGCTGTTTGGAGGATAGACTATTTTAGTCATGAGTACAGCCAGAATGGAGAATCCAGTGATTCTGGGACTATCGAATCAGAATGGCCAAATGCGAGGCTCTGTAAAGCCAGCAGGGGGTCCTGGAGGAGGTGGAGGGGGGTCCCAAACAATGCAGCCTGCCCAGGTCAAAGCCTCCAGCACAGTTAACAATGGCAACTCCCAGCCTGCACCCACAGCCAACACTATCATCAAGCCTGGGGATGACTGGAAGAAGAATCTAAAGCTTCCTCCGAAGGATTTGCGCATGAGAACTTCAGATGTGACGGCGACCAAGGGAAATGAGTTTGAGGATTACTGCTTGAAACGGGAGCTGCTTATGGGCATCTTTGAAATGGGCTGGGAGAAACCGTCACCTATACAGGAGGAGAGCATTCCCATTGCGTTGTCTGGGAGGGACATTCTAGCCAGAGCCAAGAACGGCACAGGAAAAAGTGGCGCCTACCTCATTCCCTTACTTGAACGCATTGACCTGAAGAAAGACAGCATACAAGCGTTGGTCATTGTGCCCACTAGAGAACTGGCTCTACAAGTCAGCCAGATCTGTATCCAGGTCAGCAAACACATGGGCGGGGTCAAGGTTATGGCAACTACAGTGCATGTTGTCATTGCCACTCCAGGAAGAATTTTAGACCTCATCAAAAAGGGAGTGGCCAAAGTCAATCAAGTACAGATGGTCGTATTGGATGAGGCAGATAAGCTCCTGTCGCAGGACTTTGTACAGATGATGGAGGAGATGCTGAGCTCTTTGCCTAAACAAAGGCAAATTTTGCTGTACTCTGCCACCTTCCCACTAAGTGTTCAAAAGTTCATGAACACCCATCTGCAGAAGCCCTATGAGATAAACCTGATGGAGGAGCTGACCCTGAAGGGGGTTACTCAGTATTACGCCTATGTGACTGAAAGGCAGAAAGTCCATTGCCTTAATACTCTGTTCTCCAGGCTCCAGATCAATCAGTCTATAATCTTCTGCAATTCATCCCAGCGAGTGGAGCTCCTGGCCAAGAAGATTTCGCAGCTTGGATACTCCTGTTTCTACATTCACGCCAAGATGAGACAGGAACACAGAAACCGTGTGTTCCATGATTTCAGAAATGGCTTATGTCGAAATCTCGTCTGCACTGATCTCTTCACAAGAGGAATTGATATACAAGCTGTGAATGTGGTGATCAACTTCGATTTCCCCAAACTTGGGGAGACGTACCTCCATCGCATTGGCAGATCAGGCCGATTTGGACACTTGGGTCTCGCCATTAACTTGATCACTTATGATGACCGCTTTAACCTGAAAGGTATTGAAGAACAGCTGGGTACTGAAATCAAGCCCATTCCCAGCAGTATTGACAAGAGTCTATATGTGGCCGAGTACCATAGTGAGAGTGGGGAGGAGACTTTTGGGGCGATGAAGAACAGGATTTCACAGCGGGAGAGAGGATGGGGGTGGCATGTGCGATTTGTGCAGTCTCTGGCGTACTTGACTATGTGGGCCAACACTAAGAGACTTGACCAGACTCAGACCAGCCTTTCTCCTTGGCCATGAGGACTCCTGCTTTGAGACGAATGTGGATTTATTTCTTTTTATTTTTTATTTTTTTCCCTTTCCCATAGTTTCTTTTTCTTCATCCTTTTTTCCTCCTGATTTCAGTGCAGTTTTGCATTCTTATTGGGTAGGCACTCTGTCCTAAATGTGCCATTTATACAGATCTGGCACATTGTAAACATTTTGTAAATACTTCATTTATTTTTTTTAAATGGATTGTTTTAAAACAAGCTAAAAAGGCTGGATGACCATTTGAAAAGAATTTTGGAAAGATCTTTTAAAATCAGGATTCTGTCAGCACTGGACGGCACTATTTTGTTTGCTTATGCCATTATTTTCGCCCATGGGAATTAAGTTTAGCCGAGTTTAAACCTTTCCAGGTAGTGCGCCACCTTTTTGTTATAACAA

Function

symbol description
ddx6 Predicted to enable mRNA binding activity. Acts upstream of or within response to heat and stress granule assembly. Located in cytoplasmic ribonucleoprotein granule. Orthologous to human DDX6 (DEAD-box helicase 6).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03677140_03686568.mRNA True 4637 mRNA 0.39 14 3674444 3686976

Neighbor

gene id symbol gene type direction distance location
CI01000028_03650532_03667920 BCL9L coding upstream 6433 3648405 ~ 3668011 (+)
CI01000028_03543288_03567292 CDON coding upstream 106778 3542153 ~ 3567666 (+)
CI01000028_03522456_03524618 NA coding upstream 149237 3521969 ~ 3525207 (+)
CI01000028_03426799_03428872 NA coding upstream 244294 3424865 ~ 3430150 (+)
CI01000028_03407831_03417774 NA coding upstream 255878 3407831 ~ 3418566 (+)
CI01000028_03689833_03704593 TREH coding downstream 2545 3689521 ~ 3704739 (+)
CI01000028_03946366_03958585 NA coding downstream 257545 3944521 ~ 3959823 (+)
CI01000028_04145294_04156879 NA coding downstream 457967 4144943 ~ 4158653 (+)
CI01000028_04216684_04219734 NA coding downstream 528410 4215386 ~ 4219777 (+)
CI01000028_04224432_04233899 NA coding downstream 537250 4224226 ~ 4234212 (+)
G146652 NA non-coding upstream 190728 3483447 ~ 3483716 (+)
G146651 NA non-coding upstream 191051 3483168 ~ 3483393 (+)
G146635 NA non-coding upstream 191955 3466595 ~ 3482489 (+)
G146627 NA non-coding upstream 238329 3435822 ~ 3436115 (+)
G146617 NA non-coding upstream 249959 3424273 ~ 3424485 (+)
G146765 NA non-coding downstream 140508 3827484 ~ 3828821 (+)
G146767 NA non-coding downstream 145715 3832691 ~ 3832915 (+)
G146770 NA non-coding downstream 153857 3840833 ~ 3841036 (+)
G146788 NA non-coding downstream 242252 3929228 ~ 3935653 (+)
G145843 NA other upstream 650224 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 3152513 524647 ~ 535245 (+)
G147462 NA other downstream 1271727 4958703 ~ 4989838 (+)
G147636 NA other downstream 1529114 5216090 ~ 5216611 (+)
G147693 NA other downstream 1753478 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 3782916 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 4615271 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013604 treh coding NC_007129.7 CM002902.2 43846936 ~ 43884044 (-)
bowfin (Amia calva) AMCG00004574 ddx6 coding CM030121.1 CM030121.1 53992451 ~ 54004550 (-)