Gene
RNA
| Item | Value |
|---|---|
| gene id | G146635 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 3466595 ~ 3482489 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU166601 | False | 733 | lncRNA | 0.52 | 4 | 3466595 | 3482489 |
| TU166600 | True | 742 | lncRNA | 0.48 | 4 | 3467008 | 3482489 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000028_03426799_03428872 | NA | coding | upstream | 36445 | 3424865 ~ 3430150 (+) |
| CI01000028_03407831_03417774 | NA | coding | upstream | 48029 | 3407831 ~ 3418566 (+) |
| CI01000028_03385787_03404112 | PRDM10 | coding | upstream | 62379 | 3385542 ~ 3404216 (+) |
| CI01000028_03334040_03380006 | APLP2 | coding | upstream | 86042 | 3334040 ~ 3380553 (+) |
| CI01000028_03243337_03247393 | SPRED3 | coding | upstream | 218215 | 3240956 ~ 3248380 (+) |
| CI01000028_03522456_03524618 | NA | coding | downstream | 39480 | 3521969 ~ 3525207 (+) |
| CI01000028_03543288_03567292 | CDON | coding | downstream | 59664 | 3542153 ~ 3567666 (+) |
| CI01000028_03650532_03667920 | BCL9L | coding | downstream | 165916 | 3648405 ~ 3668011 (+) |
| CI01000028_03677140_03686568 | DDX6 | coding | downstream | 191955 | 3674444 ~ 3686976 (+) |
| CI01000028_03689833_03704593 | TREH | coding | downstream | 207032 | 3689521 ~ 3704739 (+) |
| G146627 | NA | non-coding | upstream | 30480 | 3435822 ~ 3436115 (+) |
| G146617 | NA | non-coding | upstream | 42110 | 3424273 ~ 3424485 (+) |
| G146615 | NA | non-coding | upstream | 42992 | 3423325 ~ 3423603 (+) |
| G145895 | NA | non-coding | upstream | 60390 | 3405173 ~ 3406205 (+) |
| G145799 | NA | non-coding | upstream | 250169 | 3214609 ~ 3216426 (+) |
| G146651 | NA | non-coding | downstream | 679 | 3483168 ~ 3483393 (+) |
| G146652 | NA | non-coding | downstream | 958 | 3483447 ~ 3483716 (+) |
| G146765 | NA | non-coding | downstream | 344995 | 3827484 ~ 3828821 (+) |
| G146767 | NA | non-coding | downstream | 350202 | 3832691 ~ 3832915 (+) |
| G146770 | NA | non-coding | downstream | 358344 | 3840833 ~ 3841036 (+) |
| G145843 | NA | other | upstream | 442375 | 3023146 ~ 3024220 (+) |
| CI01000028_00525538_00533862 | NA | other | upstream | 2944664 | 524647 ~ 535245 (+) |
| G147462 | NA | other | downstream | 1476214 | 4958703 ~ 4989838 (+) |
| G147636 | NA | other | downstream | 1733601 | 5216090 ~ 5216611 (+) |
| G147693 | NA | other | downstream | 1957965 | 5440454 ~ 5453610 (+) |
| CI01000028_07470324_07471346 | NA | other | downstream | 3987403 | 7469543 ~ 7471432 (+) |
| CI01000028_08302370_08504940 | SPON1, SPON1A | other | downstream | 4819758 | 8302247 ~ 8504940 (+) |
