G145799


Basic Information

Item Value
gene id G145799
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3214609 ~ 3216426 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU165665
ACTTAAGTCTTACTTGATGAAGGTGGTCTTTCCTGTGGAGTACTGTCCAACCACTAGCACCATGGGTTTGTTGTCAAAGTCGGCGTCCTCCAGACTCGGTGAGTGGAAGTCATGGAAGCAGTAGTACTGCTCCAGAGGCAGGAGTTTCTTTCGATAGAGTGACTTAAGGCCCTCGGTCACTGTCCTAATCACCTCAGGGGCCTTTTTGACATTCTTGCGTCCCCAGCGTGACATCTTGCAACTTGTGAGAGTATTTAGAGTTTCCTTTGCAGTTAATTTATGGCTGTGTTTTGCACTGTTTACGTGTCCTCGGGGATGACTGCGAAGACTCTTCTCTTGCTTACAGTATTTATGTAATGCACCCAAATGTTCTGCCTTGAAGGTTTACAATGGTTTGCTGGAGTTGTAAAGCAAACTATAGTATACAATGTTATATAACTTTTAACCCCCGGGTTTCTTCTGTTTTAGTAAATGACTTTTTTTTACCTGGAAAATGTCGAATCTCAGATTGACCTTAGCTTCTCTTTTCTCCAGCCCTGGAGGTGTTTCTACATGTGAGGATGTACCTTAGAAGGAACAGTCTGTCCAAGGCACCAGAGTAGCAGCAAGTAAAACGTTACAAGTTACGGTTCTTCTCGGATCTTTCACGTATTTCGGATGAGCGATCTTGATCTGCTTGTGCTTCTGTCTCTTGCAGCAAAATCAGCTCTAAGGCATGCACACAAGTACTGCCTCCTTCCCTGCCTACGTTTCTCTCTGCACCTCTTCTTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165665 True 774 lncRNA 0.44 2 3214609 3216426

Neighbor

gene id symbol gene type direction distance location
CI01000028_03155827_03157194 NA coding upstream 57415 3154001 ~ 3157194 (+)
CI01000028_03097428_03106553 SRPR, SRPRA coding upstream 107081 3097428 ~ 3107528 (+)
CI01000028_03074166_03080440 NA coding upstream 133707 3074039 ~ 3080902 (+)
CI01000028_03053581_03067840 PEX16 coding upstream 146101 3053454 ~ 3068508 (+)
CI01000028_02915708_02935354 NA coding upstream 279179 2915513 ~ 2935430 (+)
CI01000028_03232374_03235527 PSD8, PSMD8 coding downstream 15752 3232178 ~ 3235586 (+)
CI01000028_03243337_03247393 SPRED3 coding downstream 24530 3240956 ~ 3248380 (+)
CI01000028_03334040_03380006 APLP2 coding downstream 117614 3334040 ~ 3380553 (+)
CI01000028_03385787_03404112 PRDM10 coding downstream 169116 3385542 ~ 3404216 (+)
CI01000028_03407831_03417774 NA coding downstream 191405 3407831 ~ 3418566 (+)
G145801 NA non-coding upstream 2192 3209266 ~ 3212417 (+)
G145873 NA non-coding upstream 26456 3187781 ~ 3188153 (+)
G145870 NA non-coding upstream 52961 3161421 ~ 3161648 (+)
G145826 NA non-coding upstream 88252 3126071 ~ 3126357 (+)
G145856 NA non-coding upstream 162205 3052179 ~ 3052404 (+)
G145895 NA non-coding downstream 188747 3405173 ~ 3406205 (+)
G146615 NA non-coding downstream 206899 3423325 ~ 3423603 (+)
G146617 NA non-coding downstream 207847 3424273 ~ 3424485 (+)
G146627 NA non-coding downstream 219396 3435822 ~ 3436115 (+)
G146635 NA non-coding downstream 250169 3466595 ~ 3482489 (+)
G145843 NA other upstream 190389 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 2692678 524647 ~ 535245 (+)
G147462 NA other downstream 1742277 4958703 ~ 4989838 (+)
G147636 NA other downstream 1999664 5216090 ~ 5216611 (+)
G147693 NA other downstream 2224028 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4253466 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 5085821 8302247 ~ 8504940 (+)

Expression


Co-expression Network