CI01000028_03074166_03080440


Basic Information

Item Value
gene id CI01000028_03074166_03080440
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3074039 ~ 3080902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03074166_03080440.mRNA
TTATAAATACAAGTGTCAGAGAAAATATTTGCATGTTTTTTTCCCTCCCATCTGACACAGTCTTTCTAAATAAAAAGGTAATGACTTTCACTTGTATTTTCTCTCACTTTCACACAGAAGATAGAAAATGAGTGAGGATGTGTATGAGGTCCCTGAGGGGACAGAGTATCGTTATCTAGTGCAGGATGAAGAGGAGGAACAGATACAGTACGTCCGTCGCCACTACGTCAGTCCATTCCTGGTGGTGTCACGCAGATGCATGTTCCTCATCGGCTGTGGCGTGGCCAGTCTCCTCTTTCTCGCGGGATACCTGGCTTATGTGGCTGTGAATCCGCCTCCAGGGGTGGCAGAGGTGAAGACGGAGTGCGGTTTGCTGCGTGGGCGCTGGAAAGATGGAGCGTACTCTTTCAAGGGCATCCCGTATGCTGTACCGCCAGTGGGTGAACGTCGTTGGCGTCCTCCGGCGGATCTAGTGGAGGCGGGACGGTGTTGGGAAGGTGTGTATGATGCTACTCGATTCCGCAGCATCTGTGCACAGGTGCAACCCCTTCAAAAAGACGGGCAGGTCATGGGACAGGAGGACTGTCTGCATCTCAGCGTGTGGACTCCGAGTCTACAGCCCGCAAAACCCCTGCCCGTCATGGTGTGGATCCACGGAGGGTACCTCCACATGCTGAGTGGCCAGGAGAAAGGCTACTCCCCCACTGAAAAGCTGGCGGCCCGCACGCAGATGGTGTATGTCAGTCTGAATTACAGACTCAATGCTTTTGGCTTTATGGCCCTGGAAGTGCTCAGAGAAGGCTCTCCCACCAACTCCTCTGGGAATTATGGCTTCATGGACCAGATCCAAGCACTTCAGTGGGTCCAGCAGAATATCCATAACTTCGGTGGCGATGCAGGGAGAGTTACCATATTTGGTCAAAGCTCAGGAGGAACTTCGGTTTGGACCTTGATGATGTCTCCACTAGCCAAAGGACTCTTTCATCGTGCGATTGACATGAGCGGCTCGTATGTGTATAATGCTTCCCTGGAGTCAGCAGAAAAAGACAACTTAGAATTCCTGAGGAAAACTGGCTGCAAGGACGCCATCTGCCTGAGAGGGCTACACATCACTCAAGTCCTTCAGGCAATCCCGTGGCAGGAGTACCCATCATGGGCAGCCGATGACTTAGTCGATCTTCCAGTCAAAGGTAAATTTGTTGGTCCAGTTGCAGTAGTTGATGGCCATGTTCTCACTGCTCCTCCGTTTGAGACCTGGGAGAAGGGTGGAGCCTATAATGATGTCCCATTTGTGGTTGGGACAACTGAACAGGAGACTGATTTTAGTCCTCCATATAAAAACATCTCTACATGGACATGGGGGGACTATCGGTGGATTGTGACAAACAAACTGACCCCTTTTGGAAAGAACCTGACCGATCAGGCGCTGAGGCTGTATAATAGCTCAGCACCATGTCCGACCTCTGATCGGTGTCCAGAGAGGCTCTTCACCACCATGGTCTCTGACATGAAGGCCACCTGCCCCAGGAACGACCTGGCTAAGAGAGCTTCAGATGCTTTAAAGAGCCCAGTATACCGTTATCTGGTGACTTACACTCCATCAAAACAGGCAAACGCCTCCAGCTGGCTTCTCTTCCCCAGTCGCTTTGCCTTTCATCTTCTAGACAGCCTGGCCTTCTTCAGGGGTCTTGAAATGGTGCTAGGGACCCTGTCACCAGCTGATATGAACTTCCAGGAAATGATCACCAAGTATTTTGTACATTTTGCCAAAGAGGGTAGGATGCCAGAGGAGTGGCCGGAGTTCCCCTCACATGTCGCCCTGTTGGACAAGAGCATTTCTTTTGTAAAGAGCTACTCTAGAGAGAGGTGTGATCTGTGGGAGCAGAACGGCTTCTACTCATACGCCTGGATCAACTGAGCCTCATCATCATCATCATCGGTTGTATCGATCCATCCACTGCATTTTCATCTGATCAGCGCTTTATTGTGTGATTATACAGTACTGACACATTTATAAGACTTTGCAGAGTGTGGGGTGAATTTTATGCGCAGTTGTTTGCACCTACAGGAAAATGGGTCTGTTTCCATATGAAAGCAAAATCGCAGAGATCTCTTCAATGTCTCAATTCTTTCTCCTAGAGAGCAAAGAGCTTAAACTGAACTCAAACAGAGACTCAGATCTTTCTAATGGTGAAAAATGTCCCAGAAGAGATCTCAGACTGTATATTTTCCACTATAACAAAGTCTACAAAGTTAGACCACAATATGAATTTAAACATTTCTTATCATATTTTTCCAAGACAAAATTATGGGCTATTTTATAGCTCTTTTTTCTTACTGTATGTCAACATGTCTTGTTTTATTTTGGGGCAAACATCTA

Function

GO:

id name namespace
GO:0010296 prenylcysteine methylesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03074166_03080440.mRNA True 2380 mRNA 0.48 8 3074039 3080902

Neighbor

gene id symbol gene type direction distance location
CI01000028_03053581_03067840 PEX16 coding upstream 5531 3053454 ~ 3068508 (+)
CI01000028_02915708_02935354 NA coding upstream 138609 2915513 ~ 2935430 (+)
CI01000028_02738747_02743091 NA coding upstream 330948 2738483 ~ 2743091 (+)
CI01000028_02568775_02584510 WT1B coding upstream 489150 2568775 ~ 2584889 (+)
CI01000028_02452520_02473148 CSTF3.S, CSTF3 coding upstream 600438 2452520 ~ 2473601 (+)
CI01000028_03097428_03106553 SRPR, SRPRA coding downstream 16526 3097428 ~ 3107528 (+)
CI01000028_03155827_03157194 NA coding downstream 73099 3154001 ~ 3157194 (+)
CI01000028_03232374_03235527 PSD8, PSMD8 coding downstream 151276 3232178 ~ 3235586 (+)
CI01000028_03243337_03247393 SPRED3 coding downstream 160054 3240956 ~ 3248380 (+)
CI01000028_03334040_03380006 APLP2 coding downstream 253138 3334040 ~ 3380553 (+)
G145856 NA non-coding upstream 21635 3052179 ~ 3052404 (+)
G145843 NA non-coding upstream 50359 3023146 ~ 3024220 (+)
G145842 NA non-coding upstream 52819 3020991 ~ 3021220 (+)
G145792 NA non-coding upstream 88394 2985402 ~ 2985645 (+)
G145787 NA non-coding upstream 100459 2972685 ~ 2973580 (+)
G145826 NA non-coding downstream 45169 3126071 ~ 3126357 (+)
G145870 NA non-coding downstream 80519 3161421 ~ 3161648 (+)
G145873 NA non-coding downstream 106879 3187781 ~ 3188153 (+)
G145801 NA non-coding downstream 128364 3209266 ~ 3212417 (+)
G145799 NA non-coding downstream 133707 3214609 ~ 3216426 (+)
CI01000028_00525538_00533862 NA other upstream 2552108 524647 ~ 535245 (+)
G147462 NA other downstream 1877801 4958703 ~ 4989838 (+)
G147636 NA other downstream 2135188 5216090 ~ 5216611 (+)
G147693 NA other downstream 2359552 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4388990 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 5221345 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013618 si:ch211-71n6.4 coding NC_007129.7 CM002902.2 44886077 ~ 44908479 (-)