CI01000028_03097428_03106553 (SRPR, SRPRA)


Basic Information

Item Value
gene id CI01000028_03097428_03106553
gene name SRPR, SRPRA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 3097428 ~ 3107528 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_03097428_03106553.mRNA
AATTGGGTTCTTTCGTTTTTGGCAAAGATGCTGGACTTCTTCGCCATCTTCAGTAAAGGGGGAATCGTGTTATGGTGTTTTCAGGGGGCCGGAGTCACTGAATCCTTTACCGGGCCTGTCAACGCTCTCATCCGCTCCGTCATCCTCCAGGAGAGGAGTGGGAATAACTCTTTCACCCACAATGCCCTGAGTCTTAAATACAAGCTGGACAATGAGTTTGAGCTTGTGTTTGTGGTGGGTTTTCAAAAGATCCTGACGCTGACGTATGTGGATAAGTTCATAGATGATGTCCAGCTTCACTTCAGAGATCGATACAAGAATGAGCTGGAGCAGAGAGGCCCCCTAAAGTTTCTGCTCAGTAATTTTGAATTTGGAGAGGACTTCCACAATCTTCTGAGGGAGGCGGAGGACAGCAGCAAAGCCAAGGCCCCCGTCTCTATGAGGACTTTCGACATGTCCCAGAAATCCCAAAAAACTGTGAAGTCTATGATTGAGACAAAGGATGGAGACAAAAACAAGGAGCAAGGAGGCAAGAAAAGTAAAAATGCCAAAAAGGAAGGTGTCTCAGGAGGAGATCAGACTAAAGCTGTTTCACAGACTGCCTCAAAAAAGGCTGTGGAGAATGGAAGCGATGGTCTGACCGCAGAGGAGATTATTGAGAGGAACCGTGCCAAGTTCATCAGCAAGCAGTTGGGTGGCGGAAAACCAGAGAAGACCAGTAAGTCCCCTAAACCCCCGAAGCAAAAGTTGAAGGCAAACCGGGTGTGGGATATGGGCGGGAGGAACACTGGAGAGCTGGACTACAGTGGAACCAATGGCAACTCCAGTGATGCACAGAACCAAGACTATGAGGCCTCAGCTGAACCGCTGATCCAGGTGGATTCAATGAAAGGTGACCTGCGAGGTGTGGATTATGAGTCTTCAGACGACGAGGATGAAGAAGTGGAGGAAGAGGAGCGAGTTGTGGTGACGCAAACTAACAAGAAAGGAGCTAAAAAGGGTGGTTTTGGGGGAATGTTTGGGATGCTGAAAGGCCTGGTGGGATCGAAGAATCTGACTCAGGAGGACATGGAGCCAGTTCTGGACAAGATGAGGGACCACCTCATTGCCAAGAATGTAGCAGCTGAAATAGCTTCCCAGCTCTGTGAGTCTGTGGCCAAGAAACTAGAAGGCAAAGTCATGGGCACTTTCACCACTGTGGCCTCTACGGTAAAGCAGGCTCTGCAGGACTCTCTGGTGCAGATCTTGCAGCCCAAGCGCCGTGTGGACATCTTGAGGGACGTGCTGGATGCTCGTTCTCAGCGCAAACCCTTCGTCATCACCTTCTGTGGGGTCAATGGCGTCGGCAAGTCCACCAACCTCGCCAAGATCTCTTATTGGCTGATTGAGAACGGCTTCACGGTGCTCATCGCCGCCTGTGACACGTTCCGCGCGGGCGCCGTGGAGCAGCTGAGGACTCATCAGCGCCGTCTGAACTCTCTGCACCCCCCTGAGAAGCACGGCGGACGCCCGGCCGTACAGCTCTTCGAGAAGGGATACGGCAAGGATGCTGCTGGGATCGCCATGGAAGCTATTGCCTATGCTCGTAACCAGGGTTTTGAAGTGGTGTTGATCGATACAGCTGGCCGTATGCAGGATAACGCCCCTCTGATGACGGCTCTGGCTAAGCTGATTGCGGTCAACACCCCGGACCTGGTCTTGTTTGTGGGAGAAGCACTAGTGGGCAATGAGGCTGTGGATCAGCTGGTTAAATTTAATCAAGCCCTGGCTGATCATTCCAAGACTGACAAACCCAGGCTTATCGATGGCATTGTTCTCACCAAGTTTGACACCATTGATGACAAGGTGGGCGCTGCCATCTCCATGACCTACATCACGGGTCAGCCCATCGTGTTTGTTGGCACCGGGCAGACGTACAGCGATCTGCGCAGCCTCAACGCCAGGGCTGTGGTCAGCGCGCTCATGAAGGCCTGAGCTTCTGGTGCTCTAGCCACTTTCACGGTTTCGCTACAGCTAGATATGAGACCCGTGACCCCTCTCAGCTTCTTGTGAATGCAAACATGCCTATGTGTTCAAATGATAGGTGTTTTTTAGTTTACTACAGGTTTAACTGAAATTCAGTTCATATTTAGGAACCCTCTTGTGTTTTGTTCCAGGGAAAAAAAGTGTTTGATTCAGTTTAATGAGTGGAAGGAATAACATTTGACTTGATCTCACCTCAGCAACCATTTTTGATTGACAATGCAACACAGCCAATCAGAGAGCAGCAGCTACAAACGCCTGGTGGTTTTCATTAAAGATGAGAATGAGATGAGAAAAGTATTTTTGCACTTTTCTGCCTCCATTCGCTACGATGAAGCGTTCTCATATTTACTTCCTCGCAAAAAAGATTGATTGAGGTGTTATTCAAATGTTATAAAAGAAATATAATATATTCTAAATGTATTTTGTCTACTTTTTATTTGATTAATGTAGGTACATTCAGAAGATTGCTCGTCACCCAAACTGTCTCATGAATTCACTACCATAGTGCCTCAGCTCATTACATTCGCAGTTGTTCCCAAAACAATTCCGTACAAATGCTGCCTTTTCTCATTCTTCCTTTTTTACTCAGGCTTTTCATGTCACTGGATATGGAAGTTATTAAAAGATATTGAAAGATTTGGTGCTTGAGGTTTGAAGGCCAAGATCTGAGTGAGGCACCTCAGCAAAGAGTTCTAAAATGCTGCGTATACCAAACTATCTGAATCCCTACAAAGTTACATCTTTGTTTTAATTCATTAGTAACTGTACTGTCATTTTCTTTTCTTTCAGATCCCTCATGCTTTTATTTTAGAACAAAGTCAGGTCTTAATTCTCCTCATAATAATTTGATTTAGCACAATGGCAAGACTGGAGAGCTTCATCGAGAAGATTTGTTGTACTTTGAGAATGTGTAATATTTCTTAA

Function

symbol description
srpra Predicted to enable GTPase activity and signal recognition particle binding activity. Predicted to be involved in protein targeting to ER. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be part of signal recognition particle receptor complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain. Orthologous to human SRPRA (SRP receptor subunit alpha).
srpr Predicted to enable GTPase activity and signal recognition particle binding activity. Predicted to be involved in protein targeting to ER. Predicted to be located in endoplasmic reticulum. Predicted to be part of signal recognition particle receptor complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in cap mesenchyme; female associated reproductive structure; male associated reproductive structure; renal interstitium; and testis. Orthologous to human SRPRA (SRP receptor subunit alpha).

GO:

id name namespace
GO:0005785 signal recognition particle receptor complex cellular_component

KEGG:

id description
K13431 SRPR; signal recognition particle receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_03097428_03106553.mRNA True 2949 mRNA 0.47 14 3097428 3107528

Neighbor

gene id symbol gene type direction distance location
CI01000028_03074166_03080440 NA coding upstream 16526 3074039 ~ 3080902 (+)
CI01000028_03053581_03067840 PEX16 coding upstream 28920 3053454 ~ 3068508 (+)
CI01000028_02915708_02935354 NA coding upstream 161998 2915513 ~ 2935430 (+)
CI01000028_02738747_02743091 NA coding upstream 354337 2738483 ~ 2743091 (+)
CI01000028_02568775_02584510 WT1B coding upstream 512539 2568775 ~ 2584889 (+)
CI01000028_03155827_03157194 NA coding downstream 46473 3154001 ~ 3157194 (+)
CI01000028_03232374_03235527 PSD8, PSMD8 coding downstream 124650 3232178 ~ 3235586 (+)
CI01000028_03243337_03247393 SPRED3 coding downstream 133428 3240956 ~ 3248380 (+)
CI01000028_03334040_03380006 APLP2 coding downstream 226512 3334040 ~ 3380553 (+)
CI01000028_03385787_03404112 PRDM10 coding downstream 278014 3385542 ~ 3404216 (+)
G145856 NA non-coding upstream 45024 3052179 ~ 3052404 (+)
G145843 NA non-coding upstream 73748 3023146 ~ 3024220 (+)
G145842 NA non-coding upstream 76208 3020991 ~ 3021220 (+)
G145792 NA non-coding upstream 111783 2985402 ~ 2985645 (+)
G145787 NA non-coding upstream 123848 2972685 ~ 2973580 (+)
G145826 NA non-coding downstream 18543 3126071 ~ 3126357 (+)
G145870 NA non-coding downstream 53893 3161421 ~ 3161648 (+)
G145873 NA non-coding downstream 80253 3187781 ~ 3188153 (+)
G145801 NA non-coding downstream 101738 3209266 ~ 3212417 (+)
G145799 NA non-coding downstream 107081 3214609 ~ 3216426 (+)
CI01000028_00525538_00533862 NA other upstream 2575497 524647 ~ 535245 (+)
G147462 NA other downstream 1851175 4958703 ~ 4989838 (+)
G147636 NA other downstream 2108562 5216090 ~ 5216611 (+)
G147693 NA other downstream 2332926 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4362364 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 5194719 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013617 srpra coding NC_007129.7 CM002902.2 44826173 ~ 44847855 (-)