CI01000028_02738747_02743091


Basic Information

Item Value
gene id CI01000028_02738747_02743091
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2738483 ~ 2743091 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_02738747_02743091.mRNA
GAATAAAAGCGCGAACTATGCTCGATCTGCATCGCTTTGCAGTTGGTTGCTCATTCTGGTGTTTCTTGTGTTTGTCACTTGATTCGCGCTTGAGTCACAACAACTTGCATTTCAGATACATCATTTATTGCGCAATATACTTATATTGCACAATATTGCACCATTTTTGTTTTTATCTGTACACGACTTATATCGGCACAGATAAATAACAAACCGTTGATCTCACATCTTGCGGTCTACGGTTGCCTAGTTAAGGCTTTCAAAATGGTGCTATTTACTTTACTGGGACTGGCCGCTTATTTCCTGCAAAAAAGGAAAAAAGCTGACGACACCGACTCAGGTCACAGTGAAAACTTGGACCAGAGTGATGAAGTTCCACCTGTGGAGAGTTGGCCTGATGATGGTCAGACTTCTCAGGATGTCACCAGTGACCATGAAGTCCTTCCTACTGCAGAGGAACCCATCACTGGTGACCCTGAAGTCAACAATGACTGGAGTCAAGGCCCATCATTGGAGGAGCCCATCAGTGGTGACCCTCAAATCGATGATGATTGGAGTGACGACGTCTTCCAAGATTTAATTGGTGATTTGTCCGAATGGAGTGCCGACGTCCTTCAAGCTCTCAACACTGTCATGTGCAAATTTAATGACGACTCGTTCCAAACTCCTGCCCATGTTGCACCTGACATGAGTGATGACGACACTGAAGCTTCAGACAGAGTAGCTGAGGACACTGTGGCATCTCAGTTGAGCCAGCAGCAGGATATTGAGAAAACAATTATGGAAATCAATTCCTGCTGCTATGAAATCGGCGATCAACTGGGAAAAGGAGGCTTTGGAACGGTTTATGCCGCGACTCGTTTGAAAGATGACCGTCAGGTGGCAGTGAAATTTGCTTCCAACGAGTGTGCAAAATATGCCCGCATTGACGGTTATTCCAGACCCATTCCGCTCGAGGTCGCTCTGCAAATGTATGCAAACCACGGGCCCAGGGTTCCTCAGATCATCGAGCTTCTAGACTGGAAGGATGAGGATGACCATTACATTATGGTCCTAGAGCGGCCCGTGCCCTGTCTGCCCTTGTATGACTTTTTGCAGAGCTACACGAGCACCATGGATGAGAAGTTGGCACGGATAATTATGGGGGAAGTAGTATTCGCTGCTCAAATATGCTGCCAGCGTGGAGTGTTACACCGAGACATCAAGCTGGAAAACTTGCTGATTAATCCGGACACCCTAGAGGTCAAATTGATTGACTTCGGGTGTGGTGATTTCATCACCAGCGCGGGTTACACGTCCTTTGCTGGCACAGAAGAGTACTGCCCCCCCGAGTATGAGATGTACGGCGTGTATCACGGGGAACCAGCGACAGTGTGGTCCCTCGGGATACTCCTGTTCTTAATACTTTTCTGGAAATTTCCAAGCAGACGAGACCTGCGTATGATCAGTAAGAATGTCTGGGAAAATGATGGCTTGTCACAAGAATGCTGCGATTTTATTCGTTGTTGTCTCCAGAGGAGCCCAAGGAAACGGATTGAACTGGAGAAAATCGGTCTCCACAACTGGTTTAACGGGATCAACATAAGGAACAACAGCACCTTCTCCTGCATG

Function

NR:

description
LOC562179 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_02738747_02743091.mRNA True 1611 mRNA 0.47 8 2738483 2743091

Neighbor

gene id symbol gene type direction distance location
CI01000028_02568775_02584510 WT1B coding upstream 153594 2568775 ~ 2584889 (+)
CI01000028_02452520_02473148 CSTF3.S, CSTF3 coding upstream 264882 2452520 ~ 2473601 (+)
CI01000028_02299641_02304780 PCYT1A, PCYT1AB coding upstream 433422 2299402 ~ 2305061 (+)
CI01000028_02211495_02287691 SPTBN4 coding upstream 450435 2211495 ~ 2288048 (+)
CI01000028_02175774_02182966 KCNK6 coding upstream 555023 2175524 ~ 2183460 (+)
CI01000028_02915708_02935354 NA coding downstream 172422 2915513 ~ 2935430 (+)
CI01000028_03053581_03067840 PEX16 coding downstream 310363 3053454 ~ 3068508 (+)
CI01000028_03074166_03080440 NA coding downstream 330948 3074039 ~ 3080902 (+)
CI01000028_03097428_03106553 SRPR, SRPRA coding downstream 354337 3097428 ~ 3107528 (+)
CI01000028_03155827_03157194 NA coding downstream 410910 3154001 ~ 3157194 (+)
G145643 NA non-coding upstream 4227 2665332 ~ 2734256 (+)
G145641 NA non-coding upstream 75936 2662308 ~ 2662547 (+)
G145525 NA non-coding upstream 102531 2591897 ~ 2635952 (+)
G145621 NA non-coding upstream 151780 2586158 ~ 2586703 (+)
G145615 NA non-coding upstream 171559 2566635 ~ 2566924 (+)
G145682 NA non-coding downstream 3114 2746205 ~ 2746423 (+)
G145697 NA non-coding downstream 18108 2761199 ~ 2761415 (+)
G145700 NA non-coding downstream 23223 2766314 ~ 2766550 (+)
G145729 NA non-coding downstream 187084 2930175 ~ 2931719 (+)
G145761 NA non-coding downstream 190446 2933537 ~ 2933791 (+)
CI01000028_00525538_00533862 NA other upstream 2216552 524647 ~ 535245 (+)
G145843 NA other downstream 280055 3023146 ~ 3024220 (+)
G147462 NA other downstream 2215612 4958703 ~ 4989838 (+)
G147636 NA other downstream 2472999 5216090 ~ 5216611 (+)
G147693 NA other downstream 2697363 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4726801 7469543 ~ 7471432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029859 si:ch211-215m21.22 coding NC_007116.7 CM002889.2 9112291 ~ 9114040 (+)