G145525


Basic Information

Item Value
gene id G145525
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2591897 ~ 2635952 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU165362
TCATGAGGGTCTTGCTGTCTCCGCTGAGCGAGTCCTGCAGCAGGTACGTGAGACGCGAGTTCCTGAAGGGCACGTGCGAGTGTTTGGAGCGCAGGGCGTTGATGACATCTCCCAGCGCCGACAGTGATTTGTTGATACACTGAGCCTCACGCAGACGGCTGCCCTCAGCGCCGGATTTGGCAATTCGTTCTGAACCGGCCAGATCCACCAGATTTAGCTTACCTGAGGAACGGTGGCCCGTTGAAGAGTTGAAACCCGCCACTGTGACGATAAGGAGGGCATGAGAGCGAGAGCTGTGCTCGTTTAGATTAGTGCACGCTGTTGCCCTGTTCATGTGACCCAGGTCAAACACCTTGTTAATGTCCTCCACGCTTTCCACTGTGAACTCTGTGAGTCCTGGCACATACAGCTGTCCACTGCCGTCTGGACACATCTTTATATCCAGCTTCTCATTGGGATTGTCACCCAACAGGTTCCTAAGTGTCTCATTGTAGATTTCCACCATGCTGACAGTGATCTTATAGTCCCAGTCAGGCTTTTTCTCAGACACTTCAGAGAAGAGCAGCCGCAGAGCACGCTGGTTAATGCCAGGGTCCTCAGGGACCCCCTCCATAGTGTATGTCTTTCCAGAGCCGGTTTGCCCGTAAGCAAAGATGCATACGTTAAAGCCATCAATACAGGAAGTGACCAGAGACTGCACTTCCTGGAACACCTCCTCCTGAGTGGCCTGAGTGGGAAAGACTTTGTCAAGTTCAAAGGTCATGAGCTTGCCCTTATTGGATAAGTAGAGAACAGCATCATCATCAGGGTCAAAGGTCACAAGGTTTTTGGTGTCAGCAGCATCTGTTTCTCCAGCACACACTGGGCGTACGCGACACAACACACGAATGTTTCCTTTGAGGCGCACCAGTTCATTGTGGCATTTCTTCCTCAGGTTCATCTCCCGCTTGTATTTCCGCAGCAGTTCTTGGTTTGCACTGCTCACCTCTCCAATCACCTGACAGATCTCCTGCTTGGCCTCAGTGATGGCTTTCTCCAGCATGTAGGGGAAGTCCTGCACCTGTCTCTTCAGACAGTTGTAATCACAGGTGAGGGTTCTCAGGGCTGGCTGCAGGGTCAGGAGGTTCATCCGCACACCTGCTAGGTTCTCATGGACGGCCTTCATCTCGCTCTCCGCTCTGATGAAAGCTTCCTCGATCACTCTGTTCTTCTCCTCCTCCAGACTCTGCATCTCTGCCTCTAGCTGGCCTTGAGCTCTCTCCATCTCACCCTCATACACCAGGATCTGCTGCCGGAGCTGAGTGCTGGTTCTCTGGGACTCGTGGAGCTGCTGTTCGAGCTCTCTGAGGAGCTGTCTCTGCACACCCAGCTGCTCCTGCAGCGTCTGGTTACGGGCCTGAGCCTCCATTAAAGCCTGCTTACACTGAGCCGACTCCACTTCAACCGTCTTAGTCACATACTTGACCGGTTGCGGCAGTGCAGCCTGGCGAGACAGAGCCTCCTCAGCGTCACGAAGCCGTGAGGTCAGCTGCTCCTCGCTCTGGCTCCTGTGGAGTGACGCCTCTTCCAGCTGCTGCTGGAGCTCCTGTCTGTGCTGTGCGGCCTCCTCCAACTGCTGCTGCAGCTGAACTACTACACCCGTCCTCCCCTGCACCTGCTGTTCCAGCGCAGCCAGTCGCCGCTCCCGCTCGCGGCACTCCTCGTCCTTGCGACACAGCTCTCCACGCATGGCCTCCACATCCTGACTGTGCGGGCAGTGGGCAGTAGAGCAGCTGGTCTGGGTGTGACTGGCCCTCAGCTCCTGTTTGAGCCGCTGGTTCTCACTCTCCAGCACCTCGAGCTGTTTCTCCAGATCTGTCGCCCCCAGCTCCGAGCGCAGTCTCTCCACCTCCTGTGTCTGATCCACTAGTTTCTCCTCCAGCTCCTTGACCTGTGTGCGCAGCCCTGTAATGACAGCGAGTTGTTCTCCCTCGTCTTTTTGCAGTTGCTCCTGTGAGTGAATTTTACTCACTTGTACAGCGCTGGGAAAATCCACAGGTCTCTGTGTTAAAGCACTAGAGCTCCTCAGACCTGTTGGGGACACAGCTTGGTTGAGCTGGATGCTGTTCAGTCTGAGCTGCTCTTGAGGTTCTTGGTTAAAGGATGAATGTTCCTCGTTATGGTGGTTGTCGTGGTTGAACTGGTGGTCGTGTGTCTGCAGTCGCTGTAGCAGCAGTCGTTTCGCTGCGTCTTCACTACGCAAGCGTGCCTGGAACTCACAAACTCGCTCTTGCAGCGTCTGTATCAGCAGCTGCTGCTGTTCTGAGGTTGCCGTTTCAGAGAGGTCAGAGGTCAAACAGTGGCGCTGAAGAACAGAGTTGGGCAATGAGAGGAAGGAGCTCTCCTCCTCACCATCACTCATCAGGATATCCAGGGAACTTGCATCCAATGAGAGGTCTTTGTTCCAGAGCTCCTGCAGGCAGGGGGTGTGTCCGACGTCCCAGGTCTTTCGTGTGCTGTACATGACCGCAGGGCCGAGCAGACCACTCCGCTGGACTGGGTCTCAGGCCAGCACGCCAAACTCCTTCCTCCGCCCCGTTTCCTCCTCAAACCGTTTCCTTCAAGTTTTATTCCACTCTTTTATCCTCTTGTTGAAAAAGCAGTGTTCAGTCTCAAGGTCTGAAGAGCTGAAAGTTTAGTAGTGTCTCGTGAAGTGAAGATAAACACGCCTGAGTGAAACATGCAGCACGAGACGCGCGCACACAGCTGACTGCAGTGACGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165362 True 2764 lncRNA 0.55 18 2591897 2635952

Neighbor

gene id symbol gene type direction distance location
CI01000028_02568775_02584510 WT1B coding upstream 7008 2568775 ~ 2584889 (+)
CI01000028_02452520_02473148 CSTF3.S, CSTF3 coding upstream 118296 2452520 ~ 2473601 (+)
CI01000028_02299641_02304780 PCYT1A, PCYT1AB coding upstream 286836 2299402 ~ 2305061 (+)
CI01000028_02211495_02287691 SPTBN4 coding upstream 303849 2211495 ~ 2288048 (+)
CI01000028_02175774_02182966 KCNK6 coding upstream 408437 2175524 ~ 2183460 (+)
CI01000028_02738747_02743091 NA coding downstream 102531 2738483 ~ 2743091 (+)
CI01000028_02915708_02935354 NA coding downstream 279561 2915513 ~ 2935430 (+)
CI01000028_03053581_03067840 PEX16 coding downstream 417502 3053454 ~ 3068508 (+)
CI01000028_03074166_03080440 NA coding downstream 438087 3074039 ~ 3080902 (+)
CI01000028_03097428_03106553 SRPR, SRPRA coding downstream 461476 3097428 ~ 3107528 (+)
G145621 NA non-coding upstream 5194 2586158 ~ 2586703 (+)
G145615 NA non-coding upstream 24973 2566635 ~ 2566924 (+)
G145613 NA non-coding upstream 26872 2564806 ~ 2565025 (+)
G145599 NA non-coding upstream 68821 2522794 ~ 2523076 (+)
G145595 NA non-coding upstream 91161 2500468 ~ 2500736 (+)
G145641 NA non-coding downstream 26356 2662308 ~ 2662547 (+)
G145643 NA non-coding downstream 29380 2665332 ~ 2734256 (+)
G145682 NA non-coding downstream 110253 2746205 ~ 2746423 (+)
G145697 NA non-coding downstream 125247 2761199 ~ 2761415 (+)
G145700 NA non-coding downstream 130362 2766314 ~ 2766550 (+)
CI01000028_00525538_00533862 NA other upstream 2069966 524647 ~ 535245 (+)
G145843 NA other downstream 387194 3023146 ~ 3024220 (+)
G147462 NA other downstream 2322751 4958703 ~ 4989838 (+)
G147636 NA other downstream 2580138 5216090 ~ 5216611 (+)
G147693 NA other downstream 2804502 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 4833940 7469543 ~ 7471432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location