Gene
RNA
| Item | Value |
|---|---|
| gene id | G145801 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 3209266 ~ 3212417 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU165667 | True | 2020 | lncRNA | 0.40 | 2 | 3209266 | 3212417 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000028_03155827_03157194 | NA | coding | upstream | 52072 | 3154001 ~ 3157194 (+) |
| CI01000028_03097428_03106553 | SRPR, SRPRA | coding | upstream | 101738 | 3097428 ~ 3107528 (+) |
| CI01000028_03074166_03080440 | NA | coding | upstream | 128364 | 3074039 ~ 3080902 (+) |
| CI01000028_03053581_03067840 | PEX16 | coding | upstream | 140758 | 3053454 ~ 3068508 (+) |
| CI01000028_02915708_02935354 | NA | coding | upstream | 273836 | 2915513 ~ 2935430 (+) |
| CI01000028_03232374_03235527 | PSD8, PSMD8 | coding | downstream | 19761 | 3232178 ~ 3235586 (+) |
| CI01000028_03243337_03247393 | SPRED3 | coding | downstream | 28539 | 3240956 ~ 3248380 (+) |
| CI01000028_03334040_03380006 | APLP2 | coding | downstream | 121623 | 3334040 ~ 3380553 (+) |
| CI01000028_03385787_03404112 | PRDM10 | coding | downstream | 173125 | 3385542 ~ 3404216 (+) |
| CI01000028_03407831_03417774 | NA | coding | downstream | 195414 | 3407831 ~ 3418566 (+) |
| G145873 | NA | non-coding | upstream | 21113 | 3187781 ~ 3188153 (+) |
| G145870 | NA | non-coding | upstream | 47618 | 3161421 ~ 3161648 (+) |
| G145826 | NA | non-coding | upstream | 82909 | 3126071 ~ 3126357 (+) |
| G145856 | NA | non-coding | upstream | 156862 | 3052179 ~ 3052404 (+) |
| G145843 | NA | non-coding | upstream | 185586 | 3023146 ~ 3024220 (+) |
| G145799 | NA | non-coding | downstream | 2192 | 3214609 ~ 3216426 (+) |
| G145895 | NA | non-coding | downstream | 192756 | 3405173 ~ 3406205 (+) |
| G146615 | NA | non-coding | downstream | 210908 | 3423325 ~ 3423603 (+) |
| G146617 | NA | non-coding | downstream | 211856 | 3424273 ~ 3424485 (+) |
| G146627 | NA | non-coding | downstream | 223405 | 3435822 ~ 3436115 (+) |
| CI01000028_00525538_00533862 | NA | other | upstream | 2687335 | 524647 ~ 535245 (+) |
| G147462 | NA | other | downstream | 1746286 | 4958703 ~ 4989838 (+) |
| G147636 | NA | other | downstream | 2003673 | 5216090 ~ 5216611 (+) |
| G147693 | NA | other | downstream | 2228037 | 5440454 ~ 5453610 (+) |
| CI01000028_07470324_07471346 | NA | other | downstream | 4257475 | 7469543 ~ 7471432 (+) |
| CI01000028_08302370_08504940 | SPON1, SPON1A | other | downstream | 5089830 | 8302247 ~ 8504940 (+) |
