XLOC_013617 (srpra)


Basic Information

Item Value
gene id XLOC_013617
gene name srpra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44826173 ~ 44847855 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026764
GGGAAGTTGCGTCACTTCCCCTATGAGCCACTGACGTGTCTGATCGTGAGCGTTGATTCTGACTGCAGGCGAGCAGAGCTGCGCACGTTCACGACAGCGCAGGGCAACTTCAGagcacatatttattttttatacgcGTTTGGTTTTTGTTGAACGGTGTTTGTTTTGTTCCCCGTGGTGTCGGCTTCATTGGTGACTGGCAAAGATGCTGGACTTCTTCGCCATCTTCAGTAAAGGGGGGATCGTGTTGTGGTGTTTTCAGGGCGCCGGAGTGACTGAATCTTTTACCGGGCCTGTGAACGCGCTCATCCGCTCCGTCATCCTACAGGAGAGGAGTGGAAATAACTTCTTCACCCACAACACTCTCAGTCTAAAATACAAGTTGGACAACGAGTTTGAGCTCGTGTTTGTGGTGGGTTTTCAAGCAAATCTGATGCTGAAGTACGTGGACAAGTTCATAGATGATGTCCAACTCCACTTCAGGGATCGATACAAAAATGAGCTGGAGCAGAGAGGAGCTCTAAAGTTTCTCCTCAATAATTATGAGTTTGGAGATGACTTCCACAGACTTCTGCGGGAGGCGGAGGAAAGCAGCAAAGCCAAGGGCCCCGCCAGTATGAGGACTTTCGAACAGTCCCAGAAATCCAAGAAAACTGTGAAGTCTATGATCGAGACCAAGGATGCAGACAAAAGCAAGGAGCAAGGAGGAAAGAAAAGTAAAAACGCCAAAAAGGAAGCTGAATCAGGAGGGGATAAAGCTAAAGCTGCCTCGCAGGCTCCCGCAAAAAAAGCAGTGGAGAACGGGAGTGAGAGTCTGACCCAGGATGAGATTGAGAGGAACCGTGCCAAGTTCATCAGCAAACAGCTGGGTGGAGGAAAACCAGAAAAGCCCAGtaAGTCCCCTAAACCTCAAGGGAAGCCAAAGGGGAAGGTGAACCGTGTGTGGGATATGGGCGGGAAGAGTTCTGGAGAGCTGGACTACAGTGGAACCAACGGCAACAACTCCAATGACGCAAAGTCTGAAGACAATGATGCAACAGCTGAACCGGCCATCCAGGTGGAGTCAATGAAAGGTGACCTGCGAGGTGTGGATTACGAGTCTTCAGATGATGAGGATGAAGaagtggaggaggaggagaagaaggtGGTGGTCACAAACACTAAGAAGACAGGAGCTAAAAGGAGTGGTTTTGGGGGGATGTTTGGGATGCTGAAAGGCCTGGTGGGATCAAAGAATTTGACTCAGGAGGACATGGAGCCAGTTTTGGACAAGATGAAGGACCACCTCATCGCAAAGAATGTAGCAGCCGAAATCGCCTCTCAGCTCTGTGACTCTGTGGCCAAGAAACTGGAGGGCAAAGTCATGGGCACGTTCACCACGGTGGCCTCTACGGTAAAGCAGGCTCTGCAGGACTCACTGGTGCAGATCTTGCAGCCTAAGCGACGTGTGGACATCTTGAGAGATGTGCTGGAGGCTCGTTCTCAGCGCAAACCCTTTGTCATCACCTTCTGTGGGGTGAATGGTGTTGGAAAGTCCACCAATCTTGCCAAGATCTCTTATTGGCTGATTGAGAACGGCTTCACTGTGCTGATCGCGGCCTGTGACACGTTCCGTGCTGGAGCGGTGGAGCAGCTGAGGACTCACCAGCGCCGGCTGAACTCTCTACATCCACCTGAGAAACACGGAGGCCAGCCCGCCGTCCAGCTCTTTGAGAAGGGCTATGGCAAAGATGCTGCGGGGATCGCCATGGAGGCCATTGCCTTTGCCCGTAACCAGGGATTTGACGTGGTGTTGATCGACACGGCAGGCCGTATGCAGGATAACGCTCCGCTAATGACGGCTCTGGCCAAGCTGATCGCCGTCAACACCCCGGACCTGGTGCTGTTTGTGGGAGAAGCTCTGGTGGGCAATGAGGCTGTGGATCAGCTGGTTAAATTTAATCGAGCCCTGGCTGATCATTCCAAGTCAGACAAGCCTAGACTTATTGACGGCATCGTCCTCACCAAGTTTGACACTATTGATGACAAGGTGGGAGCTGCTATCTCCATGACGTACATCACAGGTCAGCCCATCGTGTTTGTGGGCACCGGGCAGACGTACAGTGACCTGCGCAGCCTGAACGCCCGGGCTGTGGTGAGTGCACTGATGAAGGCCTGAGATCATCCGCTTCTGCCGGCTCTCCACAGTGACCCTCTCAGCCTACGTGTTGAAGTAATAGGTGTTTATTGCTTTCCTACAGGTTTAACTGAAATTCAGTTCATATTTAGGACTTTTGTGTTTTTGTTCcaggaaaaaaaggtgtttaattCAGTTTAATGAGTGGAAGGATTATCATTTGACTTGATTTCACCTCAGCCACCATATTTGATTGACATGCAGACCAGCCAATCAGACAACAGCACTAATATATGACGGTTTTTACATTTGAGATGCTAATAAGTGTTTTTGCACTTAGTTTTGTTCGATACAAACAAGTGTTCTTATACTTTCAGCTTACCAAAAAAACTCAAATCAAGATGGACTGAGGTGTTTTCAGATGTTATACAGTAATAtattctaaatgtatttttgtctatttttatttgattaagtAAGTAGGTACATTCAAGATCCAAACCGTTTCATGAATTCACTACCATAGTGCCTCGGCTCATTGCATTACAGTTGTTCCTGAATCGATTGCGTACATAAACGCTGCCTTTTctcgttctttttttttttttactcaggcTTTTCATATCGCTGGATATGAAAGGTATTAAAAGGTATTGAAAGATCTGGCGCGTGAGATTTCGAAGGCGCCTCGGTAAAGACTTTAAAAATGCTGCGTTAAACCAAACTATCCCTACGATGttacatatttgttttaattgatCAGTGACTGTACTGCCATTTCCCCTTTATCGTTTTATTTTAGAACAAAGTCAGGTCTTAATTTTCTTGCACCTCTTATTAATTTGTGCTAGCACAATGGCAAGACTGGAGAGCTTCATAGAGAAGATTTGTCGTACTTTAAGAATGTgtaatatttcttaaataaagCTGCTATAATAGCCTGTA

Function

symbol description
srpra Predicted to enable GTPase activity and signal recognition particle binding activity. Predicted to be involved in protein targeting to ER. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be part of signal recognition particle receptor complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain. Orthologous to human SRPRA (SRP receptor subunit alpha).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006605 protein targeting biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0045047 protein targeting to ER biological_process
GO:0005785 signal recognition particle receptor complex cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005047 signal recognition particle binding molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-11 Predicted to enable GTPase activity and signal recognition particle binding activity. Predicted to be involved in protein targeting to ER. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be part of signal recognition particle receptor complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain. Orthologous to human SRPRA (SRP receptor subunit alpha).

Ensembl:

ensembl_id ENSDARG00000061124

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026764 True 3061 mRNA 0.47 14 44826173 44847855

Neighbor

gene id symbol gene type direction distance location
XLOC_013616 NA coding downstream 179162 44644152 ~ 44647011 (-)
XLOC_013615 NA coding downstream 192027 44631571 ~ 44634146 (-)
XLOC_013614 psmd8 coding downstream 202498 44615591 ~ 44623675 (-)
XLOC_013613 spred3 coding downstream 214921 44596787 ~ 44611252 (-)
XLOC_013612 aplp2 coding downstream 299049 44364530 ~ 44527124 (-)
XLOC_013618 si:ch211-71n6.4 coding upstream 38222 44886077 ~ 44908479 (-)
XLOC_013619 pex16 coding upstream 65567 44913422 ~ 44935174 (-)
XLOC_013620 NA coding upstream 666109 45513964 ~ 45522215 (-)
XLOC_013621 wt1b coding upstream 746230 45594085 ~ 45617146 (-)
XLOC_013622 CR936403.1 coding upstream 771703 45619558 ~ 45645302 (-)
XLOC_013384 BX323829.1 misc downstream 25283942 19542102 ~ 19542231 (-)
XLOC_013608 NA non-coding downstream 567513 44257757 ~ 44258660 (-)
XLOC_013605 NA non-coding downstream 932038 43892837 ~ 43894135 (-)
XLOC_013603 NA non-coding downstream 1178740 43615707 ~ 43647433 (-)
XLOC_013623 NA non-coding upstream 829198 45677053 ~ 45699011 (-)
XLOC_013625 NA non-coding upstream 1036119 45883974 ~ 45889906 (-)
XLOC_013626 NA non-coding upstream 1101946 45949801 ~ 45953252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_03097428_03106553 SRPR, SRPRA coding CI01000028 null 3097428 ~ 3107528 (+)
bowfin (Amia calva) AMCG00004480 LOC107565095,LOC104942062,LOC107576893 misc CM030121.1 CM030121.1 50710839 ~ 50720925 (-)