XLOC_013616


Basic Information

Item Value
gene id XLOC_013616
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44644152 ~ 44647011 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027411
GTCAAAAACAATCAAGTCCAACGGCAATCAAAAACAAATGGGGTTGTTTCATAAAAGAAGCAAGgtttaatttacagttttactaaatgtacagttttttaaaaagtgtcattatacacaataaatacaatacaaaattaaTCTGTAGTACTATACTTCAAATTCTTACagttctattttcttttttctctttacattattattgttcttttcgTCTGTGTCATTGCTTTTCGCTGTGTTTGCTTCTGAATGGTTCCAAGTCTTTCAGTGATCCTATCTTAAATTTGAACGAGTGTCTGCACATAcatatgcaaaaacaaaacataaatgagGGATATCGCACTCTGCACTTCAGAGATGAAAAATGGCTGTTCTCacgaagaaaaaagaaatcatctATTATAAGGGCGACCCAAATTTGCTGCGCTATGATTGTAAGTTTGATTTGTAAATGTGCTCTTGATACTGGAATGCTTTAAAGGTCAACGGATTTCCTAGAGTTTGGGTGATTTGTCTACTTGTGAATGCATCATTGTTAATTCCTTTAGTCAAACAACCAAAGACAACAAATCATGCTTTCAGGGCGCTACACTATAATGCTATGATCCATAATGatcaataaatcataatataGGGGACCATTTTAACAAAGGGATCCATTGGTCTCTCTAAAATAACTGTTTGATATGACAAATTCATGATATCACTTAAAGTTCCTGCAATCTGCATCCGTCACTGTGATTATTACAAACATTACTAATTAAATGAAAGGTCATGTCTTCTCACAATTTGAGAAGAACTAAAATAACTGGGATATGGACGTTGGAACTGGCCTAGCTTCGCACCCAGGATGGAAATAAAAAGTGACAAAAATCTGAAAATCATATCAAAGTGCACTTTTTATACTTAGAAAGTACACTTAAAGGGCCATATGTAAACCAAAAGAACACGTTTGATCAGCACGAACCACAGACAAACAAAGCAAACACAGCTGAACATGGGAAAATGTCTCCATTTTCTTCCCCCTATGCACTGACATCCTGCTTTTTCAGTCTTTCAGTCGACGTGGGCTGAAGGGGCTGTTATCTACTGTGCGTCTGTGAAACCAGATTTCCATTCTGCCCTCGCCCTCCTACCTGTGAATGCTGGGACATGGGGGCGGACGAGGGCTGTGTTGAGAGGGGAGGCATGGACTGTCTGTAGGAGGGATGGGTTTGGTGCTGGTTAGGCAGGTTTAGTATACTGTCTATGGCACACTGCAGGTGCTCATTTAGCGAGTCGTCAGGCGGCGGGCTGCCGCTGGAGAAGCTTGCATTGTCCATGTCCGGAGAGTCCGACTTGCAGCGTTTGGCAGGAAGTGACGAGTCTCTTGTGCAGGAAGACTCTCCGGGAGAGGGCGGCCCTGGGGCATGCTGATCCATCCTGAAGGCGCCCCGTCCCCCTTCCCGGTGTTTGCTTCCTATGCCCTTTAACCGCCCCAaagcaccaccaccaccaccaccttcCTCCATATCATCCTCATCGTCTTTATCAAACTCCCGATGATGTTGGTACGCGTTTTTTATTCCCCGATAAAGGACGTCTTCAACGGCTGCCAGGCTTTGTGACTCCGCATGGGGGTGAGATCGCCCGTGTCCACCTTGCCGCTCCAGTTTCACACTGGCTATCACAGTTCGTTCGGGTTGAGGGGACGAGCTTTGCGGTTGGGGCGAAGAGGTAACAGGAGGTCCTGCAGGCAGAATGGGTAGTGTATCTCCACCACCTCCTGGTACTCCAGGCCTGTGACGGGGACTGATGTTCTCACGGTATGTCTTTCGGAGCGGGAGCCTGCACGTTGTTAGTGGTGGCGTTGCTGTGGACGCTGGGTTACGTTTGACCCCACCTACCTCATGGTGCTCCAGGGTGCCGTTCATCTGCGCGGTCGACGTAGAAGGTGACGATGAAGACCAGGTGGAGAATGAAGACGATGCCCCGCTCGAGGAAGTTGCGCTACTGGAGGCGGAGGCTGTGTGTGTGGTTACTGTGGTGACAGTGGAGGAGGAGGTGGATTGAGAGGTTGTGGGTTGAGTTCTAATGACGGTGGAGGGAAGAGTTACGTGTGGCTTTACTTTCTGCGGCTGCTCGGGGGTGGGCGTCTGTGGTGTGAGTTGTGATTGCGAATGGACAGGATCTAATGCAGTGTTGTGAACCACCTTACTTAACCCCGCCTCTTGCTTGATCTTCAGCTTCAAACCTATCCGCCGACGTGCCTCGTAGGTCTTGATGGGTGGTTTGCTGGTCCGTTGGGGAAGTGCAACGTCATCGTCGTCGTCAGCAGGGCGGGAGGACGGAGTGCGGCTGAAGGAGGCACTTGGTGCGACAGGCTCAGCAGGCGGTCGCACCACCGGAGCAGGCGTAGGGGTTGAGCTGGTGGACCAGGAGACTGAAGCTCCTCCTCCACCTTGCTTGATCACCAGTTTTGTTGGAGGGAAGAGTGCAGGGGCAGGAGCAGGAGCAGGAGTTGGGGCAGCAGCTGGAGCAGGTGTAGAGGTTGGAGCCGGGGCAACAGTTGTGGCAGGAGCAGGCGTAACTGCTGTAGGCGGAGCCGCAACCATTGTTGATGCAGTTCTTACAGAACTTAGCTCCACCTTTTCAAGCTTCACCGCACTGCTGTCCACTAAACACGAATTGGCCACAAATTCCTCTGCAAACAGTCAAagattaaaatgattaaacaatGCAACATCCTAAAATGTTAGCTATATATACAATGAACAAACAAAGTGCTTAAGGTAGGGCTACATGATTCTGG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027411 True 2791 lncRNA 0.48 2 44644152 44647011

Neighbor

gene id symbol gene type direction distance location
XLOC_013615 NA coding downstream 10006 44631571 ~ 44634146 (-)
XLOC_013614 psmd8 coding downstream 20477 44615591 ~ 44623675 (-)
XLOC_013613 spred3 coding downstream 32900 44596787 ~ 44611252 (-)
XLOC_013612 aplp2 coding downstream 117028 44364530 ~ 44527124 (-)
XLOC_013611 prdm10 coding downstream 284426 44320014 ~ 44359726 (-)
XLOC_013617 srpra coding upstream 179162 44826173 ~ 44847855 (-)
XLOC_013618 si:ch211-71n6.4 coding upstream 239066 44886077 ~ 44908479 (-)
XLOC_013619 pex16 coding upstream 266411 44913422 ~ 44935174 (-)
XLOC_013620 NA coding upstream 866953 45513964 ~ 45522215 (-)
XLOC_013621 wt1b coding upstream 947074 45594085 ~ 45617146 (-)
XLOC_013384 BX323829.1 misc downstream 25101921 19542102 ~ 19542231 (-)
XLOC_013608 NA non-coding downstream 385492 44257757 ~ 44258660 (-)
XLOC_013605 NA non-coding downstream 750017 43892837 ~ 43894135 (-)
XLOC_013603 NA non-coding downstream 996719 43615707 ~ 43647433 (-)
XLOC_013602 NA non-coding downstream 1051240 43589544 ~ 43592912 (-)
XLOC_013622 CR936403.1 non-coding upstream 972547 45619558 ~ 45645302 (-)
XLOC_013623 NA non-coding upstream 1030042 45677053 ~ 45699011 (-)
XLOC_013625 NA non-coding upstream 1236963 45883974 ~ 45889906 (-)
XLOC_013626 NA non-coding upstream 1302790 45949801 ~ 45953252 (-)

Expression


Co-expression Network