XLOC_013614 (psmd8)


Basic Information

Item Value
gene id XLOC_013614
gene name psmd8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44615591 ~ 44623675 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026762
ACGAACGATCTTTACGACAGAATACTGCCGTGTTCTGACAGGCCGGTGTCGTACATTTTTGCAGAATCACCATGGCGTCTGTGTTGAAAGAGACTGCGGGATTATATGAAACATTGAAAGCCGAGTGGAATAAAAAGAACCCAAACCTCAATAAATGCGGTGAGCTCTTGAGCAAGTTAAAGatTTCCCTGTTGGAGTTGAACTTTCTACCAACCACTGGGACCAAACTAACCAAACAGCAGCTTATCCTCGCACGAGATGTTTTGGAGATTGGAGCGCTGTGGAGCATTCTGAAGAAAGACATCCCCTCATTTGAACGCTACATGGCTCAGCTTAAATGCTACTACTTTGATTACAAGGATGAGTTGCCTGAGTCGGCCTACAGGCACCAGTTGCTGGGACTAAACCTGCTCTTCCTGCTCTCTCAGAACCGAGTGTCTGAATTTCACACAGAGCTGGAAAGACTGAGCGCAAAGGACATCCAGACGAACGTCTACATCAGACACCCAGTTTCATTAGAGCAGTATCTGATGGAGGGCAGTTACAACAAGGTATTTCTTGCCAAAGGAAATATTCCCGCGGAGAGCTACACCTTCTTTATTGATACTCTTCTTGATACCATCCGAGATGAGATTGCAGGTTGTATAGAGAAAGCATATGAACAGATTCAATTCAATGAAGCCACGCGGGTGCTTTTCTTTTCCTCTCCAAAAAAGATGACAGACTATGCAAAGAAAAGAAACTGGACCCAGAGTCCTGATGGATACTACTCATTCAGCACCCAGCATCAAAAGACAGAGGAGGTGACCATCCCCTCCACAGAACTGGCCAAACAAGTCATCGAGTATGCAAGACAGCTGGAAATGATTGTGTAGTGTGGATATTTGACACATGTATACATAAAGGTTCACATTTGTTCatccaaacatacaaataaaagcaTTGTACAGTGGCCATATATCTGGACTCAGTTTAGACAGCGGATGACACACCCACAAATAATGGATCTCAGAGGCCTACGAATGATCAATATCTGCCTGTATCAGGGTCTCTTGGTATGATTGTGTGTTGGATGTGTGTTTTCAGTAACTCTCTTGCATTACTGGTGATCATCTAATAACCGCTCTAAGTTTTTTtggaaataaacatttaatacgTATAGTTTGAATATCAAGTTGTTTTTTCCCCTCAATGTTTAAtgggttttttttaacaaaagtgAGTTTGAGAGTTTGGAAAAGTGGGTCTAGATAGTATGTTGGGGATGGAAGCTAAACTTCACTGCTTATTCAATGTAATCCCAGGAGTATTCATTGAATTATTGTACTCTCCGCCTTGTATCCTAGCAACTGTGAGAGGATTGGTTAAAAGTTTGCAgatgtttttctttgtttatccTGTAATGGGATAAAAATCCCCCAAATTGTCAAAAGGAAGTGACAGTTCATagtaaataaaactgttttttcTGATtcttataa
>TCONS_00026763
GTGTTGAAAGAGACTGCGGGATTATATGAAACATTGAAAGCCGAGTGGAATAAAAAGAACCCAAACCTCAATAAATGCGGTGAGCTCTTGAGCAAGTTAAAGatTTCCCTGTTGGAGTTGAACTTTCTACCAACCACTGGGACCAAACTAACCAAACAGCAGCTTATCCTCGCACGAGATGTTTTGGAGATTGGAGCGCTGTGGAGCATTCTGAAGAAAGACATCCCCTCATTTGAACGCTACATGGCTCAGCTTAAATGCTACTACTTTGATTACAAAACCGAGTGTCTGAATTTCACACAGAGCTGGAAAGACTGAGCGCAAAGGACATCCAGACGAACGTCTACATCAGACACCCAGTTTCATTAGAGCAGTATCTGATGGAGGGCAGTTACAACAAGGTATTTCTTGCCAAAGGAAATATTCCCGCGGAGAGCTACACCTTCTTTATTGATACTCTTCTTGATACCATCCGAGATGAGATTGCAGGTTGTATAGAGAAAGCATATGAACAGATTCAATTCAATGAAGCCACGCGGGTGCTTTTCTTTTCCTCTCCAAAAAAGATGACAGACTATGCAAAGAAAAGAAACTGGACCCAGAGTCCTGATGGATACTACTCATTCAGCACCCAGCATCAAAAGACAGAGGAGGTGACCATCCCCTCCACAGAACTGGCCAAACAAGTCATCGAGTATGCAAGACAGCTGGAAATGATTGTGTAGTGTGGATATTTGACACATGTATACATAAAGGTTCACATTTGTTCatccaaacatacaaataaaagcaTTGTACAGTGGCCATATATCTGGACTCAGTTTAGACAGCGGATGACACACCCACAAATAATGGATCTCAGAGGCCTACGAATGATCAATATCTGCCTGTATCAGGGTCTCTTGGTATGATTGTGTGTTG

Function

symbol description
psmd8 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be part of proteasome regulatory particle, lid subcomplex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMD8 (proteasome 26S subunit, non-ATPase 8).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040625-136 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be part of proteasome regulatory particle, lid subcomplex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMD8 (proteasome 26S subunit, non-ATPase 8).

Ensembl:

ensembl_id ENSDARG00000020454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026762 False 1481 mRNA 0.41 7 44615591 44623675
TCONS_00026763 True 921 processed_transcript 0.43 7 44616001 44623595

Neighbor

gene id symbol gene type direction distance location
XLOC_013613 spred3 coding downstream 4339 44596787 ~ 44611252 (-)
XLOC_013612 aplp2 coding downstream 88467 44364530 ~ 44527124 (-)
XLOC_013611 prdm10 coding downstream 255865 44320014 ~ 44359726 (-)
XLOC_013610 si:ch211-151h10.2 coding downstream 298671 44303153 ~ 44316920 (-)
XLOC_013609 pimr179 coding downstream 330052 44281623 ~ 44285539 (-)
XLOC_013615 NA coding upstream 7896 44631571 ~ 44634146 (-)
XLOC_013616 NA coding upstream 20477 44644152 ~ 44647011 (-)
XLOC_013617 srpra coding upstream 202498 44826173 ~ 44847855 (-)
XLOC_013618 si:ch211-71n6.4 coding upstream 262402 44886077 ~ 44908479 (-)
XLOC_013619 pex16 coding upstream 289747 44913422 ~ 44935174 (-)
XLOC_013384 BX323829.1 misc downstream 25073360 19542102 ~ 19542231 (-)
XLOC_013608 NA non-coding downstream 356931 44257757 ~ 44258660 (-)
XLOC_013605 NA non-coding downstream 721456 43892837 ~ 43894135 (-)
XLOC_013603 NA non-coding downstream 968158 43615707 ~ 43647433 (-)
XLOC_013602 NA non-coding downstream 1022679 43589544 ~ 43592912 (-)
XLOC_013601 NA non-coding downstream 1165250 43447319 ~ 43450341 (-)
XLOC_013620 NA non-coding upstream 890289 45513964 ~ 45522215 (-)
XLOC_013622 CR936403.1 non-coding upstream 995883 45619558 ~ 45645302 (-)
XLOC_013623 NA non-coding upstream 1053378 45677053 ~ 45699011 (-)

Expression


Co-expression Network