XLOC_013626


Basic Information

Item Value
gene id XLOC_013626
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 45949801 ~ 45953252 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027426
agtagttTAGGAAATTATAATCAGTTGTTTTAACATAATGTCAGCATATACtttcataaacaacaacaaaacagacaTCCACTCCGTGTTTAGGCAATAaactatatttataaataaaacaatttgctttgttttgtcaTAAAACAGTGTACAGCGAGTATTAAATTGAACCATTTAATACTATCGGATAATTGAAATGTGATAAATGCATCTGAGAAAAATAGTGGGAGGTTTGCAGAAAAACAATAAAGCTGAGTGCTGATTGTTATGCATGACAAACACCAACATATTTAAGTACTGTGTTGTTTGAGGGAGAGTGAGAGAGTGGTCACGTGATCATATTATAGTGCATCATCAGCTGATATTATTGAAGAAATTAGCATGTCGATACAGTACATATTCAATGCATGCTGAGTATTAGGACCAATGATAGTACATAGTAATACCTCCCAATTTAGGTTTTTTAAATCAACATCAAATCATAATTGACTTAATATAAAGCAGgcatgtctaaactcggtcctggaggaccggtgtcctgcaaagtttagttccaaccccaatcagacacacctgggctagctaatcaagctcttacaaggctttgtaaaaacatccttgcaggtgtgttgaggcaagttggagctaaaatctgcaggacatcggccctccaggaccgagtttggacacccctgatataaaaGGAAACTCCACTTTTTTGGCTCATTTTGAAACTAGCCCAGAGTTAAAcgagactttttttttattattcattcagtcGATCACTGTGTTTGacaggaacacttttagcttagcttagcatacatcattgaatcggattagaccattagcatctcactcaaaaatgacccaGAGTTCCGATAATTTTCTGTTATTACGTCATGTAGGAGCCAAATTGTTGTTTAttgaatttatataaaatatacttttgtGTAGTATTTTCTTTATTGAGTGCTTGTCTTGTATGGATGTTTGTTCTGAGTACTAAGAACGACAtaaaaagttgaataaaaaatgaaaagttgctatttatGTAGGTCAACATGGCTTGGAAGAAGAGCtaaacaatatatcgtttgagcatcaatatcgcaatgtgtggaTCCAcaatattagattatttattaaagattaaaagatattattaaatgttgtttattttctaattattaatgcaataatgaccaagttattttatttacatttgattgttcaatttctgtactggAACACTGTTTGACTCCCCAGAAAAAAACGTTTAttgaacttttatttttgctctgttgtGGTTATATGcttataaatttattatattttatgcagatgtacAGATGTTCATCATAGTAATCAATCTAAAAGAATGacatctttccaaatagagctattcaaatcatctggtgaaattatattcatatcacaatatcaatCGCAACCAAACAAAATATGGCAGGTTTGTccaacattgtgcagccctaggcAGTTCTAGGAATAATATTACGCAGCACCAGAAAATCTTGAAACTGTTGAGACATAGGTAAAAGAGGATTCAGAACTATTTTCAGGCACTGCGTAATATTATTGCACTGCTGCAGTCATGATACAGCAGCAACATTTtgtgattattacgccagaaagAAACTATAGTTCCTAgacatatcagcctagaaaatagcaactttccaTTTTCTGTTGTTCTTAGTACATGATAAAACTGCAGAAATCTCAAgtttaaatagaaaacaaaaattatcaaaactttttggtcaattttgagcgagatgctaatggtctaatccgattcaatgatttatgctaagctaagctaaacgtgcTTCAACCAGACCCAAAGATcggctaaatggattcaaaattGGTAAAACTCAATTTTCTAACTCAAGGGGGGTTGTAAAATTAGCCTGTTTCCCAAAACAAAAAGTGGAGTGTGCCTTTaatccagtgtttcccaaccctgttcctggaggcacaccaacagtacatattttagatGTCTCCCTTATTTGACctattaacttcaggttttggagtatCTTATGTTCTTATGGGTtgattcaggtgtgtttaattaggaagaggttgaaaatgtgtactgttggtgttcCTTCAGGAAAAGGGGTGGGAAACACCGCTTTAATCAACTAATAAATGTCCCTCGTCTATGTGTCCACAATTCATCAATTTACAATAACCAAAACAAAAGTGCATTAATTTGAACCCGAAAACTAAGGGAGACTTCAAAAGTCCTGTCTGTAAacttaaactctctctctctttttgacactctctctcactctccaCAAGTATTAGCAGAAAATCAAAAgtcataaatagaaaataattgtCAAACATCCTATCTTCTGATAGAGtttgtctttcttttgtttttaaatcattaaaaattatttgttcatcctttaaaaaaacaaaagcttatTTAGAAGTTGAGGAATACCTCTCTTTCTTTCCACATCTCATGCTTTTCTCACTTATTTTAGTTAACCTTTGTTTGAAAAACAGCTCGAGGTTAAacgggtagttcacccaaaaactggaaatccatcatttactcactcatcacttgttcaaaacctttaagagtttcacTCCTcatctgaacacaaaagaagatattttgaataatgttgaaaaCAGAGGGGTATTGCACTAAAGTGGAATCAAGAAAGCCAGGATAAGAGAAAAGGCGTGGCTTGACCTAGTTTAATCGGGTCCTCCTGGCTTAGTCCGTTGCACGTTTGCTGATCCAGGATGAGACTGAGTCGCTATGTCAAGCCTGATGTTGATAGCCAGGATAAGAGCacattcatgacatttgacagaccACAGTATTGATGATGCATGAATCAATGATGCAAGAATGGATAAAACCCGCTGCGAGTTGAAAAACGCCTATCTCGTCCACCAATCAGGGAACTTCCATTACTTTCATTCAGAGAACAGAAACATATGAGGATTCGTATTAACAAATTAAATCGTTCACTTTGTCTTAAATGTGACCAGTGGACATTCATGCTACTAATGATTATATTGTGAATTTAATGAATTATTACAAAAACCCAATATTGCAGATCTATTgtctctgtttattttattttatcaagttTATTGAATCTTTATCTAAATGATCACTTATATATCGCTTTTTAATTGAGTCTATTTAATCTAATTTATGATGTTTATCatccaaaatt

Function

GO:

id name namespace
GO:1901836 regulation of transcription of nucleolar large rRNA by RNA polymerase I biological_process
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I biological_process
GO:1990391 DNA repair complex cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027426 True 3248 lncRNA 0.34 2 45949801 45953252

Neighbor

gene id symbol gene type direction distance location
XLOC_013625 NA coding downstream 59895 45883974 ~ 45889906 (-)
XLOC_013624 cstf3 coding downstream 187933 45734297 ~ 45761868 (-)
XLOC_013623 NA coding downstream 250790 45677053 ~ 45699011 (-)
XLOC_013622 CR936403.1 coding downstream 304499 45619558 ~ 45645302 (-)
XLOC_013621 wt1b coding downstream 332655 45594085 ~ 45617146 (-)
XLOC_013627 NA coding upstream 30420 45983672 ~ 45984904 (-)
XLOC_013628 pcyt1ab coding upstream 56829 46010081 ~ 46020138 (-)
XLOC_013629 sptbn4b coding upstream 103655 46056907 ~ 46063773 (-)
XLOC_013630 sptbn4b coding upstream 145971 46099223 ~ 46135927 (-)
XLOC_013631 kcnk6 coding upstream 217852 46171104 ~ 46183462 (-)
XLOC_013384 BX323829.1 misc downstream 26407570 19542102 ~ 19542231 (-)
XLOC_013620 NA non-coding downstream 427586 45513964 ~ 45522215 (-)
XLOC_013616 NA non-coding downstream 1302790 44644152 ~ 44647011 (-)
XLOC_013634 NA non-coding upstream 300481 46253733 ~ 46258715 (-)
XLOC_013640 NA non-coding upstream 650083 46603335 ~ 46604301 (-)
XLOC_013644 NA non-coding upstream 1109247 47062499 ~ 47065867 (-)
XLOC_013645 NA non-coding upstream 1118937 47072189 ~ 47082991 (-)

Expression


Co-expression Network