XLOC_013645


Basic Information

Item Value
gene id XLOC_013645
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 47072189 ~ 47082991 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026995
tgaacctttaagggcgccttataatattgaccttaaaatggtttttaaaaaaatgaaaaacagctttattctagctgaaattaaacaaataagactttctccagaataaaaaatattataagaaatactgtgaaaatttcatggctctgttaaacctcatttgagagatatttgaaaaagaataacaaaTTTACAAGAGGGTGAATACTTTGGACTGTATATtgcagactcaacattgcatatcttgggATGTGATTATTACGGATGcgtacattgcgatatcgatgctgaaacattatattgtgcagccctatttcgcATTATTCTGTATGATTGAGAAGTCCTCTACACGTTACCAGAACTCACTGGAAGATAAAGATGTTTTGATTCAAAAGTATGTAGACAAGGTAAAGGAGTAGAATCATGCATGGTTGAATTGAATATTGTATTCTATTTTCAGACCTGAAGAATCCTGAGATCGTGACCTTGAGGAACCTGACTCAGGACAGCTCCGGCTTGTACAAGTGCACCGCCAGCAATGATGTGGGAGAGGAGAACTGCATCATCGAGGTCACCATGCAGTatgtgcgAGGTATGGGAGTGGTGGCCGGCGCAGTGGTCGGCGTCTCATTCGGTGTTCTGCTCCTCATTCTCATCATCTGGCTGGTTTTCCGcaagaaggagaagaagaaatACGAGGAGGAAGAGACGCCGAATGAGATCAGGGAGGATGCAGAAGCCCCTAAAGCCAAGTTGGTGAAACCGAACTCCTTGTCATCATCTCGCTCTGGCAGCTCGCGCTCCGGTGCTTCTTCAACACAGTCCATGGTGCACAACAGCGTCCCCCGAGGCCAAAGACCACGGCCACCCGCTGTCGCCGCCCTCAAGGAGAACGGACAGCCCCACGGCTTCCCACAATCACCCCCGGCCTACACACAGGTCGTGCCCAAAACCCCAGAACCACCCGTCACCCCAAAATTTAGACCTCCTGTTCCTCCGGTGGTCATAGGTGTCCCGCCGGGAGTCATGGTTCCTGCTCAAAGCAAGGCCTTTCAGACAGTGTAG

Function

GO:

id name namespace
GO:0019228 neuronal action potential biological_process
GO:0086010 membrane depolarization during action potential biological_process
GO:0051899 membrane depolarization biological_process
GO:0006814 sodium ion transport biological_process
GO:0034706 sodium channel complex cellular_component
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026995 True 1065 lncRNA 0.46 3 47072189 47082991

Neighbor

gene id symbol gene type direction distance location
XLOC_013644 NA coding downstream 6322 47062499 ~ 47065867 (-)
XLOC_013643 gramd1bb coding downstream 19885 46840797 ~ 47052304 (-)
XLOC_013642 dner coding downstream 309019 46699731 ~ 46763170 (-)
XLOC_013641 pid1 coding downstream 387837 46634371 ~ 46684352 (-)
XLOC_013640 NA coding downstream 467888 46603335 ~ 46604301 (-)
XLOC_013646 CABZ01039304.1 coding upstream 11343 47094334 ~ 47103131 (-)
XLOC_013647 CU633933.1 coding upstream 200196 47283187 ~ 47329251 (-)
XLOC_013648 NA coding upstream 254012 47337003 ~ 47359090 (-)
XLOC_013649 CABZ01112464.1 coding upstream 420786 47503777 ~ 47503894 (-)
XLOC_013650 NA coding upstream 439982 47522973 ~ 47533692 (-)
XLOC_013384 BX323829.1 misc downstream 27529958 19542102 ~ 19542231 (-)
XLOC_013634 NA non-coding downstream 813474 46253733 ~ 46258715 (-)
XLOC_013627 NA non-coding downstream 1087285 45983672 ~ 45984904 (-)
XLOC_013626 NA non-coding downstream 1118937 45949801 ~ 45953252 (-)
XLOC_013652 NA non-coding upstream 791544 47874535 ~ 47877879 (-)
XLOC_013653 NA non-coding upstream 798961 47881952 ~ 47886086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_01558674_01575492 CLMP, CLMPB coding CI01000028 null 1558674 ~ 1575606 (+)