XLOC_013653


Basic Information

Item Value
gene id XLOC_013653
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 47881952 ~ 47886086 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027435
GTTTCAGCATCTCTGCTCCGCTTGATCAGGTGGGCGGGCCTTATGAGCAGCCATCCTCCGCCTTCCCCTGCTCCTCCACTGAGAGAAAGAGCCAGAGAAGAGGAGGGAGGGGTGGGaggagtgagagaaagagagagagactgactCTATGAGCCGGAGAATGGAAGAGCAGTGTGTGAGAGCGAGTGTGTGAGAGAGCGAGCGCACGAGTACTCCGAGTTTATGAGAGCGTCTGCACACACATCAGAGTCACTCCAGTCACAGTAGGACAAACACAACAGATTACCATCACACAACACCGGGCAAGGACACCTAGAAGAAAGAGATTGACAGACAGCACCCCTTCATTAAAAGGGCACATCGGAGGACTGACAATAGGAGCAAGAGCTGTAGGTCGGTGGTGCGTGAACTTTGCCTTCTTGTCTTCTCTTCTCGATGCCCGAGAGGTCACCACCTCGGCGAGTCAAGATGATCCTGGAGGTCTTTCTGATCTTGTGGCTGACAGGTCACGGTAAGCAGCTTGGTCTCTTCTTCGATTCTGCTGTGTTGTGTCCTGTGTCAGTGTGCAAGCAGGGAATCTCTGAGAGTTGGAGTGGTTTCGGCTGTGAAACCGTGAGTTTGTGTCCAGGAGTTTGAAGATGCTGCATGGCATCGTGCAGGTCTGCCAAAATCGGGGGTTTCCACTGAAACCCCCAGGAGCTGGGTTGATTGTGAGGTCAGGCTCTTGACCGAAGGATGTGCATTGAGTGAACGCAACACGCGGTTATTCTTAGACAGAGATTGTAAACAGGATCGGATGTTTCCGCTGCTTGCCGCCAGGTGGttgcctttgaaaaaaaaaacaattgagatGAATCGGAGACTGCCGCGGAGACCCTCAAAAGAAGTCCGCTTGTATATACGCTGCCGAAAAAAGGCAAGGCAGCGACTCTCTGGAGCTAAACACATTGAGTTGATTGTCTTCCTCTACAGCGACCGGTGACCCAGAAAGGGAAGTTCAAATAAATTCAGAAAGCCCCAGGACTTTATTTGAAGCCCCTTGTAGACCAGGACTAGCTGCTTTGTTTGGGGTCTGTCGGACTCAAAGTCCTTTAATTGAATCGTCCTACGCAACAGCGCTTCTGCACTTCCTAAGCTGTCTCTACATCCCTCAAAGTGTCTTTCCCCCCCTTCACGGTTATCACACGCAAATCAAAGCCGAGCAGAACTTAATGACCTGCTTATCACTCAACTTGTTTCCTCGCTCCGGCACTCATTACACTGTTGCGAATGCCGTACCCCTCGCTCAGGATCCGATGGAAAGAGCAGCGTGTTCGCGTAAGCCACGGCGCTAATATATAACTTCACACACACGTAAACCCAGACCGACGCTCTCCGGGAGAGAGTGTGAGGGTGACAGTGGGAGTAAAGTATGAGGCGCTCCGTTTCTTGTTTAGTAGATCATGCCCCGGGAGGCTGTCAGCTTTATGATCTAGTTTTATAGCAGTGTTAGCCATGTGTCCAGCAAATagccagcttttttttttccctcattgtAGATTGTTTATTTGGTCACGCTTTATTTGATGATATTAACATACTATTTACTAAGACTTTtagtttaataaactattaacttgCTAGGTGGTAGTAGGGTTTAGGTATTAGGGATGATTTAGGTTAAGACTGTGCTTTATAGtgttaataaacagccaatatcttactAAAGGGTGCAATTTTATACTACTACACTGTAAACACAAATGTATGATCAGTTAGTCATGGCTGCATATGTTTTAGTGCATTGTAACTtactaaactaagttaatcatgttctaacttaattttataagttatgcaagctgttttaagtcagtttgacataatataagttcaatggattTGTATGGTTATGTTGATTCAGGCAACCAGGATCTTTTTAACAGTGTATAAATAGAATGTGCTGTGTTCATAATGTCttgcagaacacttctgatgctcttgaggtgggatttGAGTAGGGATAGGGATACGTTTGggggtatgggtaggtttaaggatgGGTTAAGGTGTAAATGATGGTCAAACTTGTAAAATAAAGGTGTAAGTATGATAATTAAttgcatgcatgtatttaatcaatgaTAAGTACAATGTCAAAGATGTATTTGTACACTTTACcatgattaatttcagtgtatGTACAAAGAGAGACCAACTAAAGTGTTAATAGGAGAAAATAAAGAAAGCTGATGCTCATCATCATTTAATGAGTTCTTTCAGAACAACACTCCATGCTAATCTTGTCATAAAGTTAGCATAACAAATGAACCATACGCCCAATGTCACTTTTATgaattaaataacagaaaaggCTCATTAGCCTTTGAAATCATCTTCGCAAAGGTCGTATTTATGGAGTTGTTCGCACTAAGAATACACAGAAGTTGCCGCCAACAGAAAATGCAGTCAGACAGTCTGTCTGATCTCCTTCCGTCTATCTCTTTAAAGCTCTCAGTGCACTGAAAGCATCGCGCGCCGAGTGAAGTCGCCTTGTTTTGCTTTGCTGTGCTGTTGAGCTGAGCTCGGTATTGTggcaatagaaaaaataaaaataaaagcagaacAGGCAGGTAAACACGAGATAACAACAGGCGCTCCTGTCGCCCCGCTCTGCCCCTGGGGATGGCAGGTTCCCCAAAGCGAAATTGTGTTTTACACATTATTGCTGTTTATGGAGCCCACCGGTGTCAGCGGAAATACATATATTAGGGAAAAGAACTGCAGAAAAACAAGTCTTTTATTTAAAAGGATGAGGAGAAGCGTATGGTTGTGTGAGAGTGAAGTCCAATAGCGGTGCTGGAAGCTTAGAAAGACCGTATTGAGTTTTTGTCAAGAGTTGAGGGTATATGTAGgacactttctcacacacacacacacacacacacctggtgaCAAGTCCTAACTGATGGCACACAGTCGAGCAGAAGCTTGCCCTTGTGCAGCACAGAAAGCTGTCGCACCACGGGCAAACCTTCTGTCCAAACGcttgtctctctttctctttttgaaCACTTTCTCACCTTCTTCTTCACTCTTATAGTCAtagtttgttcatattttgagTTTGAGCAGCAGCTCTTACTTTAGCTTTTTTCAATTTGTCCACATTTCTCTGTTCCTGGGATAAAAATGTTGCTTGTTTCCTGTCAGAAGGGAAATCATTTTTGTTCCCATGATATTTCTATGAAAAAATGGGTTGTAATcttataaaatcatttttaagtgagcattttggtttcttttcaCATAGTAAACATGCATTCTTACTAAATATAAAGTTACCTGCATATCAAAACACCTGCAGGTTTGATATTTTGGGGAGAAAACATCTCAGATTGGGTTTATTTATCTCCTTCCACTGGTGTTTTGTGCTTGCTTTAATCATAaactttattaaatgttattagatTTATGCTTATGACTAGATGTGCCAGAGGGTTCGGAAAGGTAGCTTAATTCTTAGAGAATCTTCATTGAATTCACGCTTCTTCTTCAATTTAAAATGTTCTAAGGGTGTTTGGATATTGacgaacacaaaaacacacagattttttttccatCTGTTCCTCGAATAAAAATATCATCTCTTCCCTGTCATTGCCTGAAAAAAAACTCTTCTGaagaaataaataagttatttttatggATTTTTCATAGCCaaattgattattttaaaaaatatatttcaccttatttcacattaaataaaggcaaaaatgtcCTCACAAGAAAGGTGGTGTTACTTGGATATCCATTCTGCTTGACATTATACTTGTTTTGACAGAATATAtcttaaataaagtttatttaacacaCCGAACTGGCATTTTTATTTTCAAGTTTTAATCAGACACTTTACCGaagaaatgttatttataaaacaagaaaacaattttttgatagataaggaaaaaaaaagtaaagtagaACTTTAATTTATAAGTAAATTGGGTATATAACAAGAcataaatagtaataattttgCCTTCTCCTTTCAATCTGTCCTTCAGATGAAACTGTTCCATTTTTCCAATGTCCATTTTCCATCACTCTCTGTAATAGAAGGAAAATCAATGCCATTTTagcaaaaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0030154 cell differentiation biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0048869 cellular developmental process biological_process
GO:0048880 sensory system development biological_process
GO:0003008 system process biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0150063 visual system development biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0044297 cell body cellular_component
GO:0150034 distal axon cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027435 True 4135 lncRNA 0.41 1 47881952 47886086

Neighbor

gene id symbol gene type direction distance location
XLOC_013652 NA coding downstream 4073 47874535 ~ 47877879 (-)
XLOC_013651 KIRREL3 coding downstream 219256 47534181 ~ 47662696 (-)
XLOC_013650 NA coding downstream 348260 47522973 ~ 47533692 (-)
XLOC_013649 CABZ01112464.1 coding downstream 378058 47503777 ~ 47503894 (-)
XLOC_013648 NA coding downstream 522862 47337003 ~ 47359090 (-)
XLOC_013654 NA coding upstream 20555 47906641 ~ 47907669 (-)
XLOC_013655 NA coding upstream 300470 48186556 ~ 48193086 (-)
XLOC_013656 ets1 coding upstream 393116 48279202 ~ 48296793 (-)
XLOC_013657 kcnj1a.6 coding upstream 604921 48491007 ~ 48500545 (-)
XLOC_013658 kcnj1a.2 coding upstream 612280 48498366 ~ 48530221 (-)
XLOC_013384 BX323829.1 misc downstream 28339721 19542102 ~ 19542231 (-)
XLOC_013647 CU633933.1 non-coding downstream 552701 47283187 ~ 47329251 (-)
XLOC_013645 NA non-coding downstream 798961 47072189 ~ 47082991 (-)
XLOC_013662 NA non-coding upstream 685821 48571907 ~ 48687718 (-)
XLOC_013665 NA non-coding upstream 1064923 48951009 ~ 48951722 (-)
XLOC_013668 NA non-coding upstream 1232367 49118453 ~ 49121935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location