XLOC_013651 (KIRREL3)


Basic Information

Item Value
gene id XLOC_013651
gene name KIRREL3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 47534181 ~ 47662696 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026801
ACCCACTCGTCTCTAATGGAGTTCATCTTCATTTGCTTTGCATGTTTTTCTATGTGTGAAAGATCGAGAGGTCTTCGGTGCACTTCAAGACCATTGAATGCAGTGTTTTCTCAGCAGCCTCAGGACTTGGTAGTTGTGGCCGGTCAGCCTGTTACGCTACCCTGCTCCATCCCTGGTTACCATGGAGTAGTACTTTGGCTCAGAGATGGCCTCGCTTTGGGAGTTGGAAGAGATCTTTCAGGTTATCCTCGTTACGCTGTGGTTGGGGATCACGGATCTGGCGAGCACCACCTGCGCATCCAGAAGGTGGAGCTGATGGATGATGCTGTGTTCGAGTGCCAGGCCATTCAAGCAGCCATGAGGTCCCGTCCCGCTCGACTTACTGTGCTAGTTCCACCTGACGATCCCATGATCACCGGCGGGCCTGTTGTTAGCCTGAGAGCAGGCGACCCCCTCAATCTGACGTGTCACGCGGACAACGCCAAACCTGCCGCCTCTATCATCTGGATCAGAAATGGCGAGGTGCTGAATGGAGCCATGTACTCTAAGACTCTTCTTAGAGATGGCCGAAGAGAAAGCACCGTAAGCACGCTGTACATCTCAGCCTCCAACATTGAATCCGGACAGAAGATCATCTGCAGAGCGTCCAACAAGGCTGTGCCCAATGGGAAGGAGACCAGTGTCACCATTGACATCCAACATCTACCTTTGGTGAACCTCTCAGTGGAGCCCCAACCAGTCCTGGAGGGAAACCTGGTGAAGTTTCACTGCTCAGCCAAAGCTAACCCACCTGTCACCCAATACAAGTGGGCAAAAGGAGGAAGTGTGATAAAGGAAGTGTCAGGAGACACTTACGAGGTCATAGTGGACCACTCGTTCTTCACGGAGCCAGTTTCCTGTGAAGTCACTAACCCACTAGGCAGCACCAACATCAGTCGAAATGTGGATGTCTACTTTGGACCTCGGATGGCTGCAGAACCCCAGTCGTTGCAGGTCGACCTCGGATCAGATGCTGTGTTTAACTGTGCCTGGACAGGAAACCCTTCTTTAACTATTGTGTGGATGAAAAGAGGCTCTGGAGTGGTGCTAAGCAACGAAAACATCCTGACGCTGAAATCTGTCAGGCAAGAGGATGCTGGGAAATATGTGTGCCGTGCAGTTGTGCCTCGCGTTGGTGCGGCTGAGAAAGAAGTCTCTCTCACCGTAAACGGACCTCCGACCATCTCCAGCACACAGACCCATCAGGCTCCACACGGCGAAAAGGGCCAGATCAAATGCTTCATCCGCAGCACGCCTCCTCCAGATCGCATTGCCTGGTCCTGGAAGGAGACCGTCCTGGAGTCAGGGACATCCGGTCGCTATACAGTGGAGACTGTAAGCACAGAGGACGGAGTGCTGTCCACTCTGACCATGAGTAACATCGTACCTGCTGACTTCCAGACCATCTACAACTGCACCGCCTGGAACAGCTTTGGCTCCGATACTGAGATCATTCGCCTCAAGGAACAAGGTGGGAGCCAAGGTTCCCTCTCATTATCATTTGGCCACTCCCTGCCTGTTGCTGTGATCATCGGCGTGGCGGTCGGAGCGTTCGTGGCTTTCATCGTCCTGATGGGAACGATAGGAGCGTTCTGCTGCACTCGCTCTCAGAGAAGTACGTATTTGTCAtcaactcaaaaaaagcTTTGCAGCAGGTTACCTTCCAAtttatttaacagtGCCTGA

Function

symbol description
kirrel3 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in hemopoiesis; homophilic cell adhesion via plasma membrane adhesion molecules; and nervous system development. Predicted to act upstream of or within glomerulus morphogenesis; inter-male aggressive behavior; and nervous system development. Part of synaptic vesicle. Implicated in autosomal dominant non-syndromic intellectual disability 4.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000115903

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026801 True 1725 mRNA 0.53 16 47534181 47662696

Neighbor

gene id symbol gene type direction distance location
XLOC_013650 NA coding downstream 489 47522973 ~ 47533692 (-)
XLOC_013649 CABZ01112464.1 coding downstream 30287 47503777 ~ 47503894 (-)
XLOC_013648 NA coding downstream 175091 47337003 ~ 47359090 (-)
XLOC_013647 CU633933.1 coding downstream 204930 47283187 ~ 47329251 (-)
XLOC_013646 CABZ01039304.1 coding downstream 431050 47094334 ~ 47103131 (-)
XLOC_013652 NA coding upstream 211839 47874535 ~ 47877879 (-)
XLOC_013653 NA coding upstream 219256 47881952 ~ 47886086 (-)
XLOC_013654 NA coding upstream 243945 47906641 ~ 47907669 (-)
XLOC_013655 NA coding upstream 523860 48186556 ~ 48193086 (-)
XLOC_013656 ets1 coding upstream 616506 48279202 ~ 48296793 (-)
XLOC_013384 BX323829.1 misc downstream 27991950 19542102 ~ 19542231 (-)
XLOC_013645 NA non-coding downstream 451190 47072189 ~ 47082991 (-)
XLOC_013644 NA non-coding downstream 468314 47062499 ~ 47065867 (-)
XLOC_013662 NA non-coding upstream 909211 48571907 ~ 48687718 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G145180 NA non-coding CI01000028 null 1172762 ~ 1214718 (-)