RNA id: TCONS_00026801


Basic Information

Item Value
RNA id TCONS_00026801
length 1725
RNA type mRNA
GC content 0.53
exon number 16
gene id XLOC_013651
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 47534181 ~ 47662696 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCACTCGTCTCTAATGGAGTTCATCTTCATTTGCTTTGCATGTTTTTCTATGTGTGAAAGATCGAGAGGTCTTCGGTGCACTTCAAGACCATTGAATGCAGTGTTTTCTCAGCAGCCTCAGGACTTGGTAGTTGTGGCCGGTCAGCCTGTTACGCTACCCTGCTCCATCCCTGGTTACCATGGAGTAGTACTTTGGCTCAGAGATGGCCTCGCTTTGGGAGTTGGAAGAGATCTTTCAGGTTATCCTCGTTACGCTGTGGTTGGGGATCACGGATCTGGCGAGCACCACCTGCGCATCCAGAAGGTGGAGCTGATGGATGATGCTGTGTTCGAGTGCCAGGCCATTCAAGCAGCCATGAGGTCCCGTCCCGCTCGACTTACTGTGCTAGTTCCACCTGACGATCCCATGATCACCGGCGGGCCTGTTGTTAGCCTGAGAGCAGGCGACCCCCTCAATCTGACGTGTCACGCGGACAACGCCAAACCTGCCGCCTCTATCATCTGGATCAGAAATGGCGAGGTGCTGAATGGAGCCATGTACTCTAAGACTCTTCTTAGAGATGGCCGAAGAGAAAGCACCGTAAGCACGCTGTACATCTCAGCCTCCAACATTGAATCCGGACAGAAGATCATCTGCAGAGCGTCCAACAAGGCTGTGCCCAATGGGAAGGAGACCAGTGTCACCATTGACATCCAACATCTACCTTTGGTGAACCTCTCAGTGGAGCCCCAACCAGTCCTGGAGGGAAACCTGGTGAAGTTTCACTGCTCAGCCAAAGCTAACCCACCTGTCACCCAATACAAGTGGGCAAAAGGAGGAAGTGTGATAAAGGAAGTGTCAGGAGACACTTACGAGGTCATAGTGGACCACTCGTTCTTCACGGAGCCAGTTTCCTGTGAAGTCACTAACCCACTAGGCAGCACCAACATCAGTCGAAATGTGGATGTCTACTTTGGACCTCGGATGGCTGCAGAACCCCAGTCGTTGCAGGTCGACCTCGGATCAGATGCTGTGTTTAACTGTGCCTGGACAGGAAACCCTTCTTTAACTATTGTGTGGATGAAAAGAGGCTCTGGAGTGGTGCTAAGCAACGAAAACATCCTGACGCTGAAATCTGTCAGGCAAGAGGATGCTGGGAAATATGTGTGCCGTGCAGTTGTGCCTCGCGTTGGTGCGGCTGAGAAAGAAGTCTCTCTCACCGTAAACGGACCTCCGACCATCTCCAGCACACAGACCCATCAGGCTCCACACGGCGAAAAGGGCCAGATCAAATGCTTCATCCGCAGCACGCCTCCTCCAGATCGCATTGCCTGGTCCTGGAAGGAGACCGTCCTGGAGTCAGGGACATCCGGTCGCTATACAGTGGAGACTGTAAGCACAGAGGACGGAGTGCTGTCCACTCTGACCATGAGTAACATCGTACCTGCTGACTTCCAGACCATCTACAACTGCACCGCCTGGAACAGCTTTGGCTCCGATACTGAGATCATTCGCCTCAAGGAACAAGGTGGGAGCCAAGGTTCCCTCTCATTATCATTTGGCCACTCCCTGCCTGTTGCTGTGATCATCGGCGTGGCGGTCGGAGCGTTCGTGGCTTTCATCGTCCTGATGGGAACGATAGGAGCGTTCTGCTGCACTCGCTCTCAGAGAAGTACGTATTTGTCAtcaactcaaaaaaagcTTTGCAGCAGGTTACCTTCCAAtttatttaacagtGCCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027433 lncRNA downstream 175091 47337003 ~ 47359090 (-) True XLOC_013648
TCONS_00027432 lncRNA downstream 204930 47283187 ~ 47329251 (-) True XLOC_013647
TCONS_00026798 lncRNA downstream 205466 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00026995 lncRNA downstream 451190 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00027431 lncRNA downstream 468314 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00027434 lncRNA upstream 211839 47874535 ~ 47877879 (-) True XLOC_013652
TCONS_00027435 lncRNA upstream 219256 47881952 ~ 47886086 (-) True XLOC_013653
TCONS_00027436 lncRNA upstream 243945 47906641 ~ 47907669 (-) True XLOC_013654
TCONS_00027437 lncRNA upstream 523860 48186556 ~ 48193086 (-) True XLOC_013655
TCONS_00027438 lncRNA upstream 909211 48571907 ~ 48687591 (-) False XLOC_013662
TCONS_00026800 mRNA downstream 489 47522973 ~ 47533692 (-) True XLOC_013650
TCONS_00026797 mRNA downstream 431050 47094334 ~ 47103131 (-) True XLOC_013646
TCONS_00026796 mRNA downstream 576341 46840797 ~ 46957840 (-) False XLOC_013643
TCONS_00026795 mRNA downstream 651532 46840797 ~ 46882649 (-) False XLOC_013643
TCONS_00026794 mRNA downstream 652125 46840797 ~ 46882056 (-) False XLOC_013643
TCONS_00026802 mRNA upstream 616506 48279202 ~ 48296793 (-) True XLOC_013656
TCONS_00026803 mRNA upstream 828311 48491007 ~ 48492951 (-) False XLOC_013657
TCONS_00026804 mRNA upstream 828333 48491029 ~ 48500545 (-) False XLOC_013657
TCONS_00026805 mRNA upstream 835670 48498366 ~ 48530221 (-) False XLOC_013658
TCONS_00026806 mRNA upstream 836333 48499029 ~ 48500545 (-) True XLOC_013657
TCONS_00026799 other downstream 30287 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 1888879 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 2910586 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 2922929 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 3460753 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU164966 True 708 lncRNA 0.54 5 CI01000028 1172762 ~ 1214718 (-)