RNA id: TCONS_00026794


Basic Information

Item Value
RNA id TCONS_00026794
length 2229
RNA type mRNA
GC content 0.51
exon number 20
gene id XLOC_013643
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46840797 ~ 47052304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaggcggggtttccgttgagCACTGCCAGTAACTCCAACCGCAGCTCTCCTGCCTGCTCTCCAGTTCTGCGGAAGCGCTGTCGATCTCCCATTCTGCAGAGCGCGGAGCCGGACGCCATGGTGGAGAAAGGCTCAGAGCAGTCGGACGCCTCCAAATCTCCCTCCACACCAGAGCAGCTGGTCACTCGCACCTTCTCCGGCCAGTCCACACGCAGCGGCGGCAAGAACTCCAAGAAAAGCCAGAGCTGGTACAACgtCCTCAGTCCCACATATAAGCAGCGTAATGAAGACTTCCGGAAACTCTTTAAGCAGCTGCCGGACACTGAGCGCCTCATTGTGGACTACTCGTGCGCTCTCCAGCGGGACATCCTCCTGCAGGGCCGCCTCTACCTCTCCGAAAACTGGATCTGTTTCTACAGCAACATCTTCCGCTGGGAGACTCTGCTCACAGTACGGCTGAAAGACATCTGCTCCATGACGAAGGAGAAGACAGCGCGCCTCATTCCCAACGCCATCCAGGTCTGCACAGACACTGAAAAGCACTTTTTCACATCGTTTGGTGCGAGAGACAGAACTTACATGATGATGTTCAGACTTTGGCAGAACGCTCTGCTGGAAAAGCCTCTCTGTCCTAAAGAGCTCTGGCACTTTGTTCATCAGTGTTATGGTAATGAGCTCGGCCTCACCAGCGATGATGAAGATTACGTGCCGCCTGATGATGATTTCAACACCATGGGCTACTGTGAGGAGATTCCAGCAGAGGAGAATGAGGTCAGTAATGATAACTCATCCAAAAGCAGCAGCGAGAACAAGCCGGACAACAACAGCTCTCCTCCAACACACAAGCGATCCATCACTCACTCCACCATCACCTCCACCACTCCACCCAGCAGCACCGATACACCGCTGTCCGAGTACACGGACTGTCTTGCTGATGGAGATCTGCTGCCGCTGCCTCTGCTGGCCGAGGAGAGGAACAGCGAGCCGGCCAGTCCTGTGGGCTCCGTCCTGCCACCAGCACTCGACTTCAACGACAATGAAGACATTCCCACAGAACTCAGCGACTCTTCGGAGACACACGATGAAGGAGATGAAGTTCAAGCATTCCATGAGGATCTGAACGGCCGTCAGTACATTAATGAGATTTATAAATTCAGTGTTGATAAGCTGTACAGCGTCCTCTTTACTGAGTCCCAGTTCATGACCGACTTTATGGAGCAGAGGAGATTCACAGATGTGGTTTATCATCCCTGGAAGAAGGAGGGAGCTGGGAATCAAACGAGGGACATCATGTACACAATTTCCCTGACCAATCCACTGGCCCCTAAAACCGCTGCTGTTACTGAGACTCAGACGCTGTATAAAGCCAGCCAGGAGAACGAGTGCTACATCATTGACGCAGAAGTCATCACACATGACGTGCCGTATCATGACTACTTCTACACCTTAAACCGCTATATGCTAACACGTGTGGCTAAGAACAAGTGTCGATTAAGGGTTTCTACAGAGCTGAGGTACAGGAAGCAGCCGTGGGGTTTGGTGAAGGGCTTTATTGAGAAGAACTTCTGGAGTGGGCTTGATGAGAACTTTAAAAGCCTCGagcTGGAGTTAGCCAAGATGGAGGACGCCATGATGGAAAGCCACAGACTGTCTCCTAAATCTAAAGCATTGAAGAACTCCACCCTGAGGCGGAGAAAAAGACAGCTTGCCCACCTCCGCACAGGCCATCTAGATGAGACCCTCAGTCCTGTTACCACACCAACAGACGAGGAGGTCATCCATCGCATCAAACACGTGGCAGGTTCCACTCAGACAAGACACATTCCCGAGCACACAACAGGAGGCGGGATTTTCTGCAACCTCTCTAAACCATTACTCATCATCAGCTTTGTATCATGTGTATGTTTATTTCTGGTGCTACTGGTGTTTCTGAATGTGATGCTGTTTTATAAACTCTGGATGCTGGAGTATTCTGCACAGAGCCTCACCAGCTGGCAGGGCTTACGCTTACATGAGAGtaaactGCCACAGACACAGATGGAATGGGCACAACTCTTGGAGTCCCAGCAGCGATACCACGACGCCGAGCTGCAGAAATGGAGAGAAATCATCAAATCCTCAGTATTGTTATTGGATCAGATGAAGGACTCCTTACTGAGCCTACAGAAGGGTGTGGGTCTGCGAGAATACAACTCCGAGTCTGACCAGAAAAGGAGTCGATATTACTGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-140106-106 Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Is expressed in hindbrain and otic vesicle. Orthologous to human GRAMD1B (GRAM domain containing 1B).

Ensembl:

ensembl_id ENSDART00000108574

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026994 lncRNA downstream 236496 46603335 ~ 46604301 (-) True XLOC_013640
TCONS_00026782 lncRNA downstream 582082 46253733 ~ 46258715 (-) True XLOC_013634
TCONS_00027429 lncRNA downstream 583045 46253733 ~ 46257752 (-) False XLOC_013634
TCONS_00026781 lncRNA downstream 584237 46253733 ~ 46256560 (-) False XLOC_013634
TCONS_00027428 lncRNA downstream 584983 46253733 ~ 46255814 (-) False XLOC_013634
TCONS_00027430 lncRNA upstream 45553 46927609 ~ 47052304 (-) True XLOC_013643
TCONS_00027431 lncRNA upstream 180443 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00026995 lncRNA upstream 190133 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00026798 lncRNA upstream 401131 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00027432 lncRNA upstream 401131 47283187 ~ 47329251 (-) True XLOC_013647
TCONS_00026791 mRNA downstream 77627 46699731 ~ 46763170 (-) True XLOC_013642
TCONS_00026790 mRNA downstream 156445 46634371 ~ 46684352 (-) True XLOC_013641
TCONS_00026789 mRNA downstream 376296 46395909 ~ 46464501 (-) True XLOC_013639
TCONS_00026787 mRNA downstream 460260 46370385 ~ 46380537 (-) False XLOC_013638
TCONS_00026797 mRNA upstream 212278 47094334 ~ 47103131 (-) True XLOC_013646
TCONS_00026800 mRNA upstream 640917 47522973 ~ 47533692 (-) True XLOC_013650
TCONS_00026801 mRNA upstream 652125 47534181 ~ 47662696 (-) True XLOC_013651
TCONS_00026802 mRNA upstream 1397146 48279202 ~ 48296793 (-) True XLOC_013656
TCONS_00026803 mRNA upstream 1608951 48491007 ~ 48492951 (-) False XLOC_013657
TCONS_00026769 other downstream 1195495 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 2217202 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 2229545 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2767369 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 6132273 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 621721 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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