RNA id: TCONS_00026787


Basic Information

Item Value
RNA id TCONS_00026787
length 1629
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_013638
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46370385 ~ 46380537 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATCAGCAGCTTCTGGACCTAAAAAGAGAGGAAAATAGGCAGAAAAATGAATTTATGGAGGAAAATGAGAAGGTCAGACTGGGTCTTTCCCACcgttttactttctctttatggTTTCTTTGCCAACTGCAGACCTGCAGAGCCTTTTCTCACACCGTATTTAGTGGGACCCAAAAACATCTCGGAGGAAGTGGTAACAAACTACCTGTTTCCCATCTGGACGTACTCCTACCTGTCCCTGCTCTGCCCAGTCTTCCTACTGACAGATTTGCTCAGATACAAACCTCTGATTGTAGCTCAAGGCCTTTTTCTGGTCACAAATTACATCATTTTGAGCTTTGCCAACAGCTTACCTGCTCTGACCTACCTGCAGTTTAACTTTGCCGTGGTCACGTCCACCGAAGTGGCCTACTTTTCTTATATCTACAGCGTTATTCCTCCTGAACGCTACCAGCGGGCCACAGGGTATGTGCGCAGTGCTATGCTAGCCGGGTATACATTTGGAGCCATATTAGGGCAGATGCTAATATCCTTAGCCAACACAAGCTACTTCCATGTAAACACTGTTACTTTGAGTCTAATGATAGTGGCTTTGTGTATTTCTTTGAGCCTCCCAATGCCTCAGCATGGAGTGTTTTTTAAGAAAAAGCAAGTGGAGGTGTCTATGGACACGATGAATGAGGTTGCAGATGGAGGTTCTAGTAGGGATCTAGAGAAAGAGGTTACAGGAAGATCTGTGAAAATCTGCGAATACATTAAAACATCAGGAAAACAGATGTGGGAGAGTCTGAAGGAGTCATATTCATCCAGAAGGCTGGTGCAGTGGTCGCTCTGGTGGGCTTTGGCTACTGCGGGTTACGGGCAGGTTTTTAATTACGTCCAGCTGATGTGGGACCACATTGAGCCCTCCAGCACATCTTCAGTGTATAATGGTGGAGTAGAGGCCGTCTGCGCACTTGTAGGTGCCGCCGCAGCCTTCTCTGTGGGTTATATCCAGGTACAGTGGGGCGTTTGGGGTGAGCTCTCTCTGGGTGTTTTCTCTGCAGTCGGTGCCGGGTGTGTGTTTCTTATGGGTCTCACCAACAGCATCTGGCTGAGTTACGCAGGCTACGCCATCTTTAAAGCCTCATACATGTTCCTCATCACCATCACAATGTTTCAGATAGCGGTGAACCTCTCCATGGAATGTTACGCTCTGACTTTTGGCATTAACTCTTTTGTTGCTCTAACTCTTCAAACAATACTTACTGCCATCGTGGTGGACAATACAGCTCTGGGACTGGACATTGCAACACAGTTTCTTGTATATGGAGGATACTACAGCATAATCTCTGTACTGTTCCTCATCCAGGGGCTTTACACTGTTTGTAAGCATTTCTGCACGTCTACAGTTACAAACACAGAGGcgcttactgtcatcatggaggATCAACGGAAATCAGACACAAGTGGAAAACAGGAAacacaatcatcatcatcatcatcatcactacaAAACAAAGAACAATCCGCGCTACAGGCTTACACTGAAACTGCGCTGTAGTAGGTTGTTGTATGTTGCATGATATatgtatgattattatttattcattcagtaaaACTACTCAAACTCATTCGTTGTTTCCTG

Function

GO:

id name namespace
GO:0051180 vitamin transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0090482 vitamin transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-166 Predicted to enable vitamin transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within vitamin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in biotin-responsive basal ganglia disease. Orthologous to human SLC19A3 (solute carrier family 19 member 3).

Ensembl:

ensembl_id ENSDART00000086772

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026782 lncRNA downstream 111670 46253733 ~ 46258715 (-) True XLOC_013634
TCONS_00027429 lncRNA downstream 112633 46253733 ~ 46257752 (-) False XLOC_013634
TCONS_00026781 lncRNA downstream 113825 46253733 ~ 46256560 (-) False XLOC_013634
TCONS_00027428 lncRNA downstream 114571 46253733 ~ 46255814 (-) False XLOC_013634
TCONS_00027427 lncRNA downstream 385481 45983672 ~ 45984904 (-) True XLOC_013627
TCONS_00026994 lncRNA upstream 222798 46603335 ~ 46604301 (-) True XLOC_013640
TCONS_00027430 lncRNA upstream 547072 46927609 ~ 47052304 (-) True XLOC_013643
TCONS_00027431 lncRNA upstream 681962 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00026995 lncRNA upstream 691652 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00026798 lncRNA upstream 902650 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00026786 mRNA downstream 869 46361544 ~ 46369516 (-) True XLOC_013637
TCONS_00026785 mRNA downstream 16116 46350574 ~ 46354269 (-) True XLOC_013636
TCONS_00026784 mRNA downstream 75253 46263291 ~ 46295132 (-) True XLOC_013635
TCONS_00026783 mRNA downstream 89807 46263169 ~ 46280578 (-) False XLOC_013635
TCONS_00026779 mRNA downstream 128609 46222229 ~ 46241776 (-) False XLOC_013633
TCONS_00026789 mRNA upstream 15372 46395909 ~ 46464501 (-) True XLOC_013639
TCONS_00026790 mRNA upstream 253834 46634371 ~ 46684352 (-) True XLOC_013641
TCONS_00026791 mRNA upstream 319194 46699731 ~ 46763170 (-) True XLOC_013642
TCONS_00026792 mRNA upstream 460260 46840797 ~ 46881108 (-) False XLOC_013643
TCONS_00026793 mRNA upstream 460260 46840797 ~ 46881682 (-) False XLOC_013643
TCONS_00026769 other downstream 725083 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 1746790 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 1759133 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2296957 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 5661861 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 1123240 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_02049119_02056683.mRNA True 1695 mRNA 0.42 4 CI01000028 2049119 ~ 2057082 (+)