RNA id: TCONS_00026994


Basic Information

Item Value
RNA id TCONS_00026994
length 208
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_013640
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46603335 ~ 46604301 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAATCAGTAATGCGATACTTAAAACACGAAGTACCAAAGGATTTCTGGATGAAATTGACATTTATCAACAACATCTTGACACTAAGCTATCAAATGGCTCGTTTACCACCGAATACAATgctttttattaaattcaaaGCCGTTTGTGAAGCTGCAAACGACTTCAGAGTTTTGAAGTGGTCACTGCGTGTGCCTTTTAAACTGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026782 lncRNA downstream 344620 46253733 ~ 46258715 (-) True XLOC_013634
TCONS_00027429 lncRNA downstream 345583 46253733 ~ 46257752 (-) False XLOC_013634
TCONS_00026781 lncRNA downstream 346775 46253733 ~ 46256560 (-) False XLOC_013634
TCONS_00027428 lncRNA downstream 347521 46253733 ~ 46255814 (-) False XLOC_013634
TCONS_00027427 lncRNA downstream 618431 45983672 ~ 45984904 (-) True XLOC_013627
TCONS_00027430 lncRNA upstream 323308 46927609 ~ 47052304 (-) True XLOC_013643
TCONS_00027431 lncRNA upstream 458198 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00026995 lncRNA upstream 467888 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00026798 lncRNA upstream 678886 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00027432 lncRNA upstream 678886 47283187 ~ 47329251 (-) True XLOC_013647
TCONS_00026789 mRNA downstream 138834 46395909 ~ 46464501 (-) True XLOC_013639
TCONS_00026787 mRNA downstream 222798 46370385 ~ 46380537 (-) False XLOC_013638
TCONS_00026788 mRNA downstream 222864 46370469 ~ 46380471 (-) True XLOC_013638
TCONS_00026786 mRNA downstream 233819 46361544 ~ 46369516 (-) True XLOC_013637
TCONS_00026785 mRNA downstream 249066 46350574 ~ 46354269 (-) True XLOC_013636
TCONS_00026790 mRNA upstream 30070 46634371 ~ 46684352 (-) True XLOC_013641
TCONS_00026791 mRNA upstream 95430 46699731 ~ 46763170 (-) True XLOC_013642
TCONS_00026792 mRNA upstream 236496 46840797 ~ 46881108 (-) False XLOC_013643
TCONS_00026793 mRNA upstream 236496 46840797 ~ 46881682 (-) False XLOC_013643
TCONS_00026794 mRNA upstream 236496 46840797 ~ 46882056 (-) False XLOC_013643
TCONS_00026769 other downstream 958033 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 1979740 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 1992083 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2529907 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 5894811 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 899476 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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