RNA id: TCONS_00026791


Basic Information

Item Value
RNA id TCONS_00026791
length 2237
RNA type mRNA
GC content 0.56
exon number 13
gene id XLOC_013642
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46699731 ~ 46763170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGCTCTTCATCCTTcctctcctcctccttctcctcggGGAGATGGACGGACTCTTTGGGACCCCTCTGACGTCCAGCCCGGGCCCCGGCGAGGACCCAAGCACTGCGCCGGACCCCTGCGAGGGCCGACGTGCCTGAACGGAGGCGTCTGCAGCCGGCTGGGAGAGATGGAGGACAGTCAGAGCACGCAGATGCAGACTCTGGAGCCGTGGGCTTATATTTGTGTCTGCAGCCGGGGCTTCACAGGGCAGAACTGTGAGTTTTTTGCAGATCCGTGTGCCAGCAGTCCCTGTCTCCATGGCAACTGTAGTCAGGATGGCGAAGGGGAAGGGTTTTCATGCGAGTGCAGTGAGGGCTACAGCGGTGCCCGTTGTGACCTGCCAACCTTGACGTTTGACCTGTCCGAGTCCACCTGGGACCTCGCTGAGAGCCTCGTACCCGAGCACGCCACGCCTGCCACTCCGGCCACACCCGCCACCACCACTCAGGTGCTTCAGCCAACCACAGTCCTCACCACCACTCAAGCCCCACCCACCCTGGAGCCCTGGCAGCCCAGAGCCGGTCAGAGAGTGCTGGAGATACTGTGGGACGATCAGCAGatTACTAATGAAGCTGAATGTGTGAGCACCGCAGGAGGAGAGTCTGCCGGAATGATGAGCATCTCCTTGGAGCTCGCAGAGGAAACAGCTGTGAAGCTGGTTGGAAATGTGAGTGGTTCTGCGGTGCTGTGGCGTGTTGGTGCGTCTGGTTATGAGCAGTGCTCGGTTGCTGACGGCACGATCATGTGGTTCCAGCAGAGCTCTGAGGGTCTGGTGCTGCCCGATCAGTCCCTGCCGCTGGGGCACAACTACTTCATCAGTGTTCTTCATGTTGGCTCTCCCTCTGGTCCAGAGGTCACTTTGAGGCTTCATCTCCTGGTCAAAACCAATAACTGCATGGAGCCCGGCAGTGCATTCAGTGACCCACAATGCTCCGGGAAAGGCAAATGCGTCACCCAGTCCTCCGTGGACACCTTTTACTGTCGGTGTGATGATGGTTATTCTGGGATCTTCTGCGAGGAGTTTGATGCCTGCCATCTGAAGCCCTGTGAAAACAACGGCTCTTGTGCTGACCTCAGACAGAGAGATGAAGGACAAAACTACACCTGTACCTGCCAGACagGTTTTGAAGGAGAGCGCTGTCAGTCATTGGTGGATCACTGTGTTTCTGGACCCTGCAGGAACGGAGCCACTTGCTCCAGCAGCCTTGAAGGACCTCACTGCTATTGTGCTGAAGGTTATCAGGGCATCATGTGTGAGCAGAAGATTGATCCCTGTGCTTCAGGGCCCTGCCATAATAATGCCAGCTGCTCCCCACAGGGTGCTGGTTTGGGCTTCAGCTGCACTTGTCCTGCAGGTTTCACTGGACCCACCTGTGCCCAGCTGGTGGACTTCTGTGCCCTCAACCCATGCGCTCACGGCATCTGCCGCAGCATCGGCACTAGTTACCGCTGTCTGTGTGTTCCAGGTTATCATGGTCTGTACTGTGAGGAGGAGTATAATGAATGCCTGTCTGCTCCGTGTCAGAATTACGCCACATGCAGAGATCTGATCAACGCTTACGAGTGCATCTGCGCCTCTCAGTTCACAGGTAAGCACTGTGAGATCTATAAGGACCCCTGTCTGAAGCTCAGGTGCCAGAATGGAGGACACTGTGAAAGTGGAGGGAGAAACGCGTCCTGTGTGTGTCCTCCAGGATATATGGGTGAGAACTGTGAGGTTGACGTCAACGAGTGTGAGAGTAACCCCTGCCACCATGGCGGGACCTGCATCGACCAATCAAACGGCTACACCTGTCATTGTCCTCCCGGCTGGGTCGGTGGAAGCTGTGAGATCCATCTGCAGTGGAAGATGGCTCAGCCGGTGGACTCTCTGACCAACATGCCACGTCACTCTCTGTATATCATCATCGGGGCTCTGTGCGTGGCCTTCGTCTTGATGCTCATCATCCTCATCGTCGGGATCTGTCGCATCAGCCGTATTGAATACCAGGGCTCATCTCGTCACGCCTACCAAGAGTTTTACAACTGCCGCAGTATCGACAGTGATTTCAGCAATGCGATCGCCTCTATCCGCCACGCACGGTTTGGCAAGAAATCCAGACCAGCGATGTATGATGCGACTCCCATCAGTTATGAAGATTACAGCCCTGACGACAAGCCTCTGGTCGCACTCATTAAAACTAAAGATTTGTGA

Function

GO:

id name namespace
GO:2000178 negative regulation of neural precursor cell proliferation biological_process
GO:0060253 negative regulation of glial cell proliferation biological_process
GO:0010001 glial cell differentiation biological_process
GO:0022008 neurogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-130502-1 Predicted to enable calcium ion binding activity. Acts upstream of or within glial cell differentiation; negative regulation of glial cell proliferation; and negative regulation of neural precursor cell proliferation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in immature eye; nervous system; neural keel; and proneural cluster. Orthologous to human DNER (delta/notch like EGF repeat containing).

Ensembl:

ensembl_id ENSDART00000171880

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026994 lncRNA downstream 95430 46603335 ~ 46604301 (-) True XLOC_013640
TCONS_00026782 lncRNA downstream 441016 46253733 ~ 46258715 (-) True XLOC_013634
TCONS_00027429 lncRNA downstream 441979 46253733 ~ 46257752 (-) False XLOC_013634
TCONS_00026781 lncRNA downstream 443171 46253733 ~ 46256560 (-) False XLOC_013634
TCONS_00027428 lncRNA downstream 443917 46253733 ~ 46255814 (-) False XLOC_013634
TCONS_00027430 lncRNA upstream 164439 46927609 ~ 47052304 (-) True XLOC_013643
TCONS_00027431 lncRNA upstream 299329 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00026995 lncRNA upstream 309019 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00026798 lncRNA upstream 520017 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00027432 lncRNA upstream 520017 47283187 ~ 47329251 (-) True XLOC_013647
TCONS_00026790 mRNA downstream 15379 46634371 ~ 46684352 (-) True XLOC_013641
TCONS_00026789 mRNA downstream 235230 46395909 ~ 46464501 (-) True XLOC_013639
TCONS_00026787 mRNA downstream 319194 46370385 ~ 46380537 (-) False XLOC_013638
TCONS_00026788 mRNA downstream 319260 46370469 ~ 46380471 (-) True XLOC_013638
TCONS_00026786 mRNA downstream 330215 46361544 ~ 46369516 (-) True XLOC_013637
TCONS_00026792 mRNA upstream 77627 46840797 ~ 46881108 (-) False XLOC_013643
TCONS_00026793 mRNA upstream 77627 46840797 ~ 46881682 (-) False XLOC_013643
TCONS_00026794 mRNA upstream 77627 46840797 ~ 46882056 (-) False XLOC_013643
TCONS_00026795 mRNA upstream 77627 46840797 ~ 46882649 (-) False XLOC_013643
TCONS_00026796 mRNA upstream 77627 46840797 ~ 46957840 (-) False XLOC_013643
TCONS_00026769 other downstream 1054429 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 2076136 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 2088479 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2626303 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 5991207 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 740607 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_01807411_01830472.mRNA True 2170 mRNA 0.52 12 CI01000028 1807411 ~ 1830740 (+)