XLOC_013607 (cdon)


Basic Information

Item Value
gene id XLOC_013607
gene name cdon
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 44053052 ~ 44129151 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026750
TGAAACAGTTAGACGAGTAGGGTTCACTTACTACGAACTTCACGGGGAACTGAAGGCTTGAGTACGTACTTTGACTCCGCGGCGTTCACGCGTCTGCGCGCCTGGAACAGAGAGCGAGCAAAGCGGCATATCTTTCCTCTTTTCCCCGTTGTTTTGCACTTTGAGCCCGCGTCTAATGGAGGGCCCCGTACGGATCTGCCATCGGGAGAATGTGTTTCGCTGCTAGTGTGTCCGGCTGCCCGCAGcttttgccctcctgtgaaagGTGTGGAGTTTATGTGGAGGGGGTGTGTGTGAGGCCCCAGGTTAGTGCACAGACGTGAAACAGCGTCATGGAGGACGGTGGCCTGAGATTATTGTCCGCTGTGCTTTGTGTGTGCCATACTCTGCTCCTCAACTGCCCAActgttctttctttctctttccgtGCGGAGCCTCTCTCAGCGATTCTGAAGCAAGGTTCTTCAGTCCACCTACATTGCACAACACATCCAGCCACTGCCAGAATCAGCTGGCTGTTTCAAGGGCAACCACTAGATCCCAGTCACCATTCTGGAGTGGAACTAAGTCAAGACTCCCTCTCACTGTCAAACCTCCAACCGGCTCTCACAGGCTCCTACCAGTGCTCGGCTCGCTCTGAGACAGGCTCCATCATCAGCAGGCATGCACGAGTTACCATTGCAGATATTGAGGAGTTTGCGGAAACCCATCGGAggtcatttactgtaaataagGGCGACACTGCTGTTATTGAATGTCCACTTCCGCGCAGCAATCCACCTGCTCTTCCACGCTTCCGGATACGGGGGAAATGGCTGGAACAGTCTACAGACGAGTATTTAATACTGCCCTCCGGGAACCTTCAGATTGTGTCTGTGTCTTCAGAACATCAGGGAATGTATAAATGTGGAGCTTATAATCCTTTAACTCGAGAGACTCGCGTAGAGGCTCATGGCACTAAACTCTTAGTCAAAGATTCAGAAAGCTCTTCACCTGTAAGGATTGTCTATCCCATCACACCTCGCAGTCTTACTGTGGACCAGTCTGGATCTCTAACCCTTGAGTGTGTTGTATCAGGAAGTCTTTCTTCAAAGGTCAAATGGATGAAAAATGGGGCAGAGCTATCACTGAGCTCCAAAAGGATGTTATCGCATAGCAACCTGGTGTTGAATGACATTCAGCCGGGTGATGGAGGACATTATAGCTGCTCTGTTCCTACTGACCGTGGAGCTGTGGTCAGTGTCAACTACACTGTGAATGTGCTTGCACATGTATCCATCCTGCGAGGTTTGTCAGATCAGGCTGCAGTTGCTGGATCCTCTGTGAGATTTACCTGTGCTGCCAGTGGCAATCCAACCCCCAACATCACATGGCTCCTTAACGCTGCCCCTTTATCTTCTTCACCCCGCCTCAAAATCTCTGGCACCTCCCTTCTCATCTCTTCAACAACGCTTCAAGATCAGGGAATCTACCAGTGCATGTTTGATAATGGCATTAGCTCTGCACAATCCACAGGAAGACTCAGTATCCAATCAGAACCACAGTCTAGTTCCATATCTGCAGTTCCAGTGAAGACGCAACCTTCTGTTCACCCAATCCAGAGTGATGAGGGTGATGAACTGTTCCTCTCCATGGGGGAGGCGGCGCTTGGAGAAACTGTAGGACCGCCCACCGAGAGAATCGGCGACAGACCCACACCAGAAGCACCAATCATAATCAGCCCTCCTCAAACACACAAACCCAACATGTACGATCTGGAGTGGAGAGCAGGCCGAGACTGGGGCATCGCTATCATCGCATACTTTGTCAAATATCGCAAGGTGGATGATATGGGAAATGTGGTGGGGAGCTGGCACACGGTGCGGGTACCCGGCAGCGAGAAGTCTCTGCCCTTGTCAGAGCTGGAGCCGTCCAGCCTGTATGAGGTCCTGATGGTGGCTCGCAGCGCTGCTGGAGAGGGACAGCCGGCCATGCTGACCTTCCGAACCGGAAAAGAGCGGGCGTCCCCCAATAAGAATCCCTCCAAAGCTCCAATTGTGTCTCTACCAGAGAAAACTCCAGAAGATAAAACTACTAACACTTATTATGGAGTGGTCATACATGACAGAGTTCCTGAGGCTCCAGACCGCCCCACAATCTCAATGGCGACAGAAAGTTCTGTTTACGTCACATGGATACCTCGGGCCAATGGTGGCTCTCCCATCACTGCATTTCGCGTGGAGTACAGAAAACAGGGGCGTAATGGAGACTGGATCATTGCAGCTGATAACATCTCACCGCTTAAACTGTCAGTGGAAGTGCGCAACCTTGAGCCAGGTTCCACTTACCGTTTCCGTGTCATTGCCATGAATAACTATGGTGAAAGCCCAGCTAGCGCCACCTCCAGGCCATACCAGGTCTCCATGTCAAGTTCACCTGTCTCGAACCGTCCAGTCACTGGGCCTCACATCTCTTCCACTGATGCTGTTAGTGATACTCAGATTCTGTTACGCTGGACCTACACTCCATCCAGCAATAACAACACTCCCATCCAGGGCTTCTACATCTACTATCGGCCAACAGACAGCGACAATGACAGCGACTACAAGAAAGATGTGGTGGAAGGCTTCAAATTCTGGCACATGATTGGTGAACTCCAACCCGAGACATCTTATGACATCAAGATGCAGTGCTATAATGACGGCGGCGAGAGCGAATACAGTAACGTCATGATCTGCGAGACCAAAGCCCGGCAGCCTCCAGGTGTGCCTAGCCTGCGTCCTATCACTCCTCCAGGCTTCTATCCTGCTGATACACCCAGCCAGCCGGGCGGCCTGCTCTACCTGATCGTGGGCTGTGTTCTGGGCGTCATGGTGCTCATTCTGCTTGTCTTCATCGTCATGTGCTTATGGAGGAATAGACAGCAGAACAGTATGCATAAATACGACCCTCCAAATTACATCTACCAGTCAGCGGAGATGAACGGCCATGTTCTGGATTATTCTGCTCTGCCCGGCTCCAGTCATGTGAATGGCAGTGTGCACACGGGGTGCGGACACACGGCTCCCATGATGCCCCAGACCTGTCATCATCTCCATCACAAACTGCCCAACGGACTGGCTCTGCTGAACGGATCAGGAGGCCTGTACCCTGCTGGACACCCTCACGCACACGACACCTCGCTACACCAAAATAACATGGAATACGAGCACCCGTCCCCTCATCACCTACACAACGGTGGAGGAATATACACGGCTCTGCCCCAGAACGACTCGTCCGACTGCATGAGCTGTCAGAACTTCTGCAACAACAACAGGTGTTACACAAAAACCAATGGCACTTTCTCCGGCGGCACTCTTCCACTAATGCACCGCGTGGCAGCTCGCCAACCCGATGGCCTGGAAATGATGCCCCTCAACCCCATCCTGTCCCGCTGCCATGGACGTGACAGTCCACAGCTCAACGGCTGCCAGGACAGAGACTCAGTCCAACAGGCGGAGGAGGGCAACGTGCCGCCCCTGTCTCACAATTCCCCCTGCTTGCCTGTGGAAACAAAGTCCAGCCTGGAGCAGCAGAGAGGAGTTCAGCAGGTACAGCATGAAGACTCGGAGGGTCCTGTGGTGTGTTGGGAACGGCTGGGACTGGATCTAGACTGTAAGGAGAAAACAGCCTGGATCTCTACTGGAAGCCTGACTGGAGATCTCATCCAGCCCACCGTGCAGGAGATCTGAACACATTGTTCAACAACGCGCATAaacgctgaaaaaaaaaagagaaacaagagAGGCAGTCGAATAAATAAAGGATGCTCCCAGTGTTGGAATGGTCAGAGACATTGTTGTGACTTGAAGTGGACACTAACTGACTGCTGGAGATGAAACGAATGAAGATATTGGTGGAATCAAAGACTGAAACGATCCCGATCATGGGAGGacgttaaaaaaaaagtcaacacaAAAAAACTCTTTAgatgacttatttattttttgtagtagtaaaatattatttcatatgaATGTATCTGTTGTaagaaaaaaagtttcttttatattatttatgcctttttttttggatgagaaacctttattttctttgttgtttattttgttgacTATATTTTTGTCTGTTTCTTCCACAAAGTGTGGAGTTTAGCCATTGTACGTG
>TCONS_00026751
ACGCCGTAACTGTATTAAATAAAGCCAAGCGAgctgcacaaataaaatattgtggcACAAATTGTAATTAGATAGTTGGCTCTtggcttatgtgtgtgtgtgactgcggCGAGCTGCTGCTACgagctgtgagtgtgtgtaggtgtgtgtgtgtgtgtgtgtacacagggCCTTGAGTGTGTTCAGTGGGAATACTGGAGCCAGGCCAGAACAAACGTTAAGCTGCCTTATAAGGAGCCTGTCTGCAGCAAAGCAACTGTCTGAATCCTTTTGGGACACTGCTTCAAATTCTGGCACATGATTGGTGAACTCCAACCCGAGACATCTTATGACATCAAGATGCAGTGCTATAATGACGGCGGCGAGAGCGAATACAGTAACGTCATGATCTGCGAGACCAAAGCCCGGCAGCCTCCAGGTGTGCCTAGCCTGCGTCCTATCACTCCTCCAGGCTTCTATCCTGCTGATACACCCAGCCAGCCGGGCGGCCTGCTCTACCTGATCGTGGGCTGTGTTCTGGGCGTCATGGTGCTCATTCTGCTTGTCTTCATCGTCATGTGCTTATGGAGGAATAGACAGCAGAACAGTATGCATAAATACGACCCTCCAAATTACATCTACCAGTCAGCGGAGATGAACGGCCATGTTCTGGATTATTCTGCTCTGCCCGGCTCCAGTCATGTGAATGGCAGTGTGCACACGGGGTGCGGACACACGGCTCCCATGATGCCCCAGACCTGTCATCATCTCCATCACAAACTGCCCAACGGACTGGCTCTGCTGAACGGATCAGGAGGCCTGTACCCTGCTGGACACCCTCACGCACACGACACCTCGCTACAC

Function

symbol description
cdon Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in holoprosencephaly 11. Orthologous to human CDON (cell adhesion associated, oncogene regulated).

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04340 Hedgehog signaling pathway

ZFIN:

id description
ZDB-GENE-021115-4 Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in holoprosencephaly 11. Orthologous to human CDON (cell adhesion associated, oncogene regulated).

Ensembl:

ensembl_id ENSDARG00000061328

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026750 False 4143 mRNA 0.50 19 44053052 44129151
TCONS_00026751 True 843 processed_transcript 0.52 4 44065033 44073428

Neighbor

gene id symbol gene type direction distance location
XLOC_013606 bcl9l coding downstream 59418 43896153 ~ 43993634 (-)
XLOC_013605 NA coding downstream 158917 43892837 ~ 43894135 (-)
XLOC_013604 treh coding downstream 169008 43846936 ~ 43884044 (-)
XLOC_013603 NA coding downstream 405619 43615707 ~ 43647433 (-)
XLOC_013602 NA coding downstream 460140 43589544 ~ 43592912 (-)
XLOC_013608 NA coding upstream 128606 44257757 ~ 44258660 (-)
XLOC_013609 pimr179 coding upstream 152472 44281623 ~ 44285539 (-)
XLOC_013610 si:ch211-151h10.2 coding upstream 174002 44303153 ~ 44316920 (-)
XLOC_013611 prdm10 coding upstream 190863 44320014 ~ 44359726 (-)
XLOC_013612 aplp2 coding upstream 235379 44364530 ~ 44527124 (-)
XLOC_013384 BX323829.1 misc downstream 24510821 19542102 ~ 19542231 (-)
XLOC_013601 NA non-coding downstream 602711 43447319 ~ 43450341 (-)
XLOC_013600 NA non-coding downstream 1193796 42858003 ~ 42859256 (-)
XLOC_013615 NA non-coding upstream 502420 44631571 ~ 44634146 (-)
XLOC_013616 NA non-coding upstream 515001 44644152 ~ 44647011 (-)
XLOC_013620 NA non-coding upstream 1384813 45513964 ~ 45522215 (-)
XLOC_013622 CR936403.1 non-coding upstream 1490407 45619558 ~ 45645302 (-)

Expression


Co-expression Network