RNA id: TCONS_00027428


Basic Information

Item Value
RNA id TCONS_00027428
length 528
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_013634
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46253733 ~ 46258715 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCACTCCAGGTTCAAGACCTTTGTGAATCTGGGTCATCCACTGAGAATGGACAGGAAGACTGGAATTATGAGGACATGGAGATGTTTATATAAAGATCtgtttgaaaacaatattttatcaTAACTTAAAAGAATGggttataatatatacagtatacaaacTATCAGACTTATtctgattttttaaaagtaaaaacatacTGCAAGAACATGATATATAAGAACAATCTCATATGATAGCAACTATTGTGCATATATAGAGTTTGGTAAATAAAATTGTACTTGTTGTAATCACTTcttgctattttaaataaattattgtgcTAAATAAATGATTCGCAAATCCTTCACTTCGCAAAACgttatttacataaaaacaatGAAAGGTGGATGAATGACTTGCTTTTATCGAGGTGGAGCAGTGCTATGAATGACCTTTTGGGTTCAGGTTGACTTCACAAATATCTAAAGTTTCACACTTGCTAATTAGAGCCAATGGATTAAGTTTTTAGgtttcattagtatt

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:1902866 regulation of retina development in camera-type eye biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009890 negative regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0031327 negative regulation of cellular biosynthetic process biological_process
GO:1902679 negative regulation of RNA biosynthetic process biological_process
GO:0010720 positive regulation of cell development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0051253 negative regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1903507 negative regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0008283 cell population proliferation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0061061 muscle structure development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0061074 regulation of neural retina development biological_process
GO:0010558 negative regulation of macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:2000113 negative regulation of cellular macromolecule biosynthetic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027427 lncRNA downstream 268829 45983672 ~ 45984904 (-) True XLOC_013627
TCONS_00027426 lncRNA downstream 300481 45949801 ~ 45953252 (-) True XLOC_013626
TCONS_00027425 lncRNA downstream 363827 45883974 ~ 45889906 (-) True XLOC_013625
TCONS_00027420 lncRNA downstream 363934 45883974 ~ 45889799 (-) False XLOC_013625
TCONS_00026994 lncRNA upstream 347521 46603335 ~ 46604301 (-) True XLOC_013640
TCONS_00027430 lncRNA upstream 671795 46927609 ~ 47052304 (-) True XLOC_013643
TCONS_00027431 lncRNA upstream 806685 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00026995 lncRNA upstream 816375 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00026798 lncRNA upstream 1027373 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00026778 mRNA downstream 11877 46211210 ~ 46241856 (-) False XLOC_013633
TCONS_00026777 mRNA downstream 11877 46211210 ~ 46241856 (-) False XLOC_013633
TCONS_00026779 mRNA downstream 11957 46222229 ~ 46241776 (-) False XLOC_013633
TCONS_00026780 mRNA downstream 11958 46223357 ~ 46241775 (-) True XLOC_013633
TCONS_00026776 mRNA downstream 45152 46194037 ~ 46208581 (-) True XLOC_013632
TCONS_00026783 mRNA upstream 7355 46263169 ~ 46280578 (-) False XLOC_013635
TCONS_00026784 mRNA upstream 7477 46263291 ~ 46295132 (-) True XLOC_013635
TCONS_00026785 mRNA upstream 94760 46350574 ~ 46354269 (-) True XLOC_013636
TCONS_00026786 mRNA upstream 105730 46361544 ~ 46369516 (-) True XLOC_013637
TCONS_00026787 mRNA upstream 114571 46370385 ~ 46380537 (-) False XLOC_013638
TCONS_00026769 other downstream 608431 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 1630138 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 1642481 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2180305 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 5545209 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 1247963 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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