RNA id: TCONS_00026784


Basic Information

Item Value
RNA id TCONS_00026784
length 1702
RNA type mRNA
GC content 0.49
exon number 12
gene id XLOC_013635
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46263169 ~ 46295132 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAATCTGTCTTTAAAAGATGTGCATGTATagcatttgagtttattttttgttttctgggTCTGCTGCAGGTCTCTGTTGCTCAATCTTGGCTTATCGCTGTGTGTCATGGAGTGTGAGTGGGACACAAACTGAAGACCGGATCAATAACAGGTTCCTGCGAGTCCGCCTCTTCCCGCACACCGGCCTCGTTCGACCAGACGGGGATTGCCTTTTTTATTTCTTCCGAATGTGCTGCTGACTTTTGACAGAATGAAGTCTGATATACCATACGAAAAGATGGTTGATGTGGAGCTGAGCAGAGGAGAAGGACATCACGGCTCACAGAAGTATTACAGGTGTCTGATCGTCCTCACCTGTATAACCACAGTCTTGTTGATCCTCCTGTCACTCCAAACGCTGCTTGTTCCAATGGCCAAATCCTCCTCCACCAAATCATCTGTACAGCAGGAGCGCGTGCTAATCAGAGAAACCTGCACGGACCCCTGCAGGATTGTCTTAGTGGAGAGCATCCCCGAGGGTATGGTGTTTAACTCCTCTGTCCATCAGTCCATTTACGATGCCTGGCTGAACCTCATTTCTGCTACCCAGTCCAGTCTGGACATCGCCTCCTTCTACTGGACTCTCACcaactctgacacacacacacaagagcccACCGCTAATCAGGGGCAGCAGATTCTGAAGAAATTAGGGCAGCTCTCAAGCAAAGCGTATGTTCGAATTGCTGTCGATAAACCAGCAGATAAAAAACCTATGGAGGACATCAACTTCCTCAGCTCCTACGGAGCTGATGTGCGGATGGTGAACATGCGAGAGTTGACAACAGGTGTGCTGCATACCAAGTTCTGGATCGTGGATAAGAAGCACATTTACATCGGAAGCGCAAATATGGACTGGAGGTCACTAACACAGGTGAAGGAGTTGGGCGCAGTTGTGTATGACTGCAGCTGTCTTGCTGAGGATCTTGGGAAGATCTTTGAGGCTTACTGGTACCTGAATCAGACCAAGACCGTTCCTGCACACTGGCCTAACAAATACTCCACCCTGTATAATAAGGACACACCAATGCAGCTGTCGCTCAACGGGACCAGTGCTAGCGTCTATCTATCAAGCTCTCCTCCTTCACTCTGTGCTGAAGGCCGGACTCCAGATCTTCAGTCTATCCTCGATGTGATCGCTAATGCTCAGCAGTTTGTCTACATCGCTGTGATGAACTATCTGCCCACTATGGAGTTCTCCAGAAGCAAGAGGTACTGGATGGATATTGACACTGAGCTGCGGCGTGTGGCTTATGAGCGCAGGATTCGTGTGCGTCTGCTGATCAGCTGCTGGAACAGCACCAAACCAATCATGTTCCCTTTCCTGCGCTCCCTTGCTTCCTTACAGGACACAAACCAGCTGGACATTCAAGTGAGAATTTTCACAGTGCCTTCAGACGCTCAGCAGAAAAAAATCCCCTTCGCCAGAGTGAACCATAACAAGTACATGGTCACAGATCAAGTTGCTTACATAGGCACCTCTAACTGGTCCGGGGACTACTTTGTGAACACGGCCGGCTCTGCATTAGTGGTGAACCAGACTTCAGCTTCAGCAAGTTCGACAGTGCAGGAGCAGCTACAGGCCGTGTTTGAGAGAGACTGGGAGTCTGCATACAGCACAGACATCAACCACAGATCCAACCGTAAAGACATCTGCTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-212 Predicted to enable catalytic activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in spinocerebellar ataxia 46. Orthologous to human PLD3 (phospholipase D family member 3).

Ensembl:

ensembl_id ENSDART00000190940

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026782 lncRNA downstream 4576 46253733 ~ 46258715 (-) True XLOC_013634
TCONS_00027429 lncRNA downstream 5539 46253733 ~ 46257752 (-) False XLOC_013634
TCONS_00026781 lncRNA downstream 6731 46253733 ~ 46256560 (-) False XLOC_013634
TCONS_00027428 lncRNA downstream 7477 46253733 ~ 46255814 (-) False XLOC_013634
TCONS_00027427 lncRNA downstream 278387 45983672 ~ 45984904 (-) True XLOC_013627
TCONS_00026994 lncRNA upstream 308203 46603335 ~ 46604301 (-) True XLOC_013640
TCONS_00027430 lncRNA upstream 632477 46927609 ~ 47052304 (-) True XLOC_013643
TCONS_00027431 lncRNA upstream 767367 47062499 ~ 47065867 (-) True XLOC_013644
TCONS_00026995 lncRNA upstream 777057 47072189 ~ 47082991 (-) True XLOC_013645
TCONS_00026798 lncRNA upstream 988055 47283187 ~ 47328715 (-) False XLOC_013647
TCONS_00026778 mRNA downstream 21435 46211210 ~ 46241856 (-) False XLOC_013633
TCONS_00026777 mRNA downstream 21435 46211210 ~ 46241856 (-) False XLOC_013633
TCONS_00026779 mRNA downstream 21515 46222229 ~ 46241776 (-) False XLOC_013633
TCONS_00026780 mRNA downstream 21516 46223357 ~ 46241775 (-) True XLOC_013633
TCONS_00026776 mRNA downstream 54710 46194037 ~ 46208581 (-) True XLOC_013632
TCONS_00026785 mRNA upstream 55442 46350574 ~ 46354269 (-) True XLOC_013636
TCONS_00026786 mRNA upstream 66412 46361544 ~ 46369516 (-) True XLOC_013637
TCONS_00026787 mRNA upstream 75253 46370385 ~ 46380537 (-) False XLOC_013638
TCONS_00026788 mRNA upstream 75337 46370469 ~ 46380471 (-) True XLOC_013638
TCONS_00026789 mRNA upstream 100777 46395909 ~ 46464501 (-) True XLOC_013639
TCONS_00026769 other downstream 617989 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 1639696 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 1652039 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2189863 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 5554767 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 1208645 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_02112434_02123527.mRNA True 2416 mRNA 0.43 12 CI01000028 2112434 ~ 2124287 (+)
bowfin (Amia calva) AMCG00013575 True 3508 mRNA 0.45 13 CM030125.1 36843528 ~ 36860797 (+)