RNA id: TCONS_00026709


Basic Information

Item Value
RNA id TCONS_00026709
length 775
RNA type processed_transcript
GC content 0.50
exon number 6
gene id XLOC_013577
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40698550 ~ 40708537 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTACATGTCAGTGTACAGCTGCAGGTTCGGCGCATGCAGGTAGCTGCAGTGTCCAGGTGAATCATGGCTCTGACTGGGTTTTGTGGTTCCAGGCAACTGTTGGACCGCCATATGtgaaTGAATAAGAATTTTGTGCTTGAAGACTGAGGACAGACAAGTGCCACTGCGGACGTGGGCAAACTCCTGTGTTCTGAAGGAGCGCAGGGTGTTTGCTGAGGGAGAGGAGGTTGGTTCAGGACAGCACTACAAACCCGCACAGGAGAGTAGATGGGTACAAAGACTTCCCATTTCTGCAGAGGATGGGATCATAATGGACTACGCTCCGCAGGGTGAACCAACATCTTCAGATGTCTATGAAGAGGAAGCCTTGCTGAAGTACCTGAACAGGTTGCCTGGTCCACTCAGTTTTCAAGAGCTGATGCCTGGACTTTTGCGCAGAGaggtggaagtagccatcagtaaACTCGGCCTTCTTTTTGATAAAACCTACGCATGGGACATCTTTTCAGACATGATGAGAAGCCAGCTACTATGTACTCTCCCAAACGCTGACCTGCCTAAGCCTTTCACTGACACCACAAGAGCCATTTTGGTGGACTGGCTCATTCAAGTCCATGAAGTGTTTCAGTTCTCAGAGGAAACGCTTTATCTGACAGTGCACTTGTTGAATCGAGCACTCCGGCTCATCAAGGTGTCCATCTCCGGCCTGCAGTTGTTGGGTGTGGTTTGCCTCTTTCTGGCTGCTAAAAGAGAGGAATGTCTTTTACCAGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139291

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026988 lncRNA downstream 180264 40521492 ~ 40522524 (-) True XLOC_013575
TCONS_00026987 lncRNA downstream 187709 40513030 ~ 40515079 (-) True XLOC_013574
TCONS_00027395 lncRNA downstream 250498 40364311 ~ 40452290 (-) False XLOC_013571
TCONS_00027394 lncRNA downstream 250543 40364311 ~ 40452245 (-) False XLOC_013571
TCONS_00027396 lncRNA downstream 250599 40373724 ~ 40452189 (-) True XLOC_013571
TCONS_00026716 lncRNA upstream 201297 40909821 ~ 40911375 (-) False XLOC_013583
TCONS_00026989 lncRNA upstream 523790 41232314 ~ 41232928 (-) True XLOC_013588
TCONS_00026990 lncRNA upstream 635282 41343806 ~ 41344821 (-) True XLOC_013589
TCONS_00026991 lncRNA upstream 642465 41350989 ~ 41351483 (-) True XLOC_013590
TCONS_00027397 lncRNA upstream 834018 41542542 ~ 41544172 (-) False XLOC_013592
TCONS_00026707 mRNA downstream 17996 40669698 ~ 40684792 (-) True XLOC_013576
TCONS_00026706 mRNA downstream 18032 40668615 ~ 40684756 (-) False XLOC_013576
TCONS_00026704 mRNA downstream 193782 40486457 ~ 40509006 (-) False XLOC_013573
TCONS_00026705 mRNA downstream 194260 40486627 ~ 40508528 (-) True XLOC_013573
TCONS_00026703 mRNA downstream 221760 40479684 ~ 40481028 (-) True XLOC_013572
TCONS_00026710 mRNA upstream 2664 40711188 ~ 40753583 (-) True XLOC_013578
TCONS_00026711 mRNA upstream 53389 40761913 ~ 40773413 (-) False XLOC_013579
TCONS_00026712 mRNA upstream 53389 40761913 ~ 40856354 (-) True XLOC_013579
TCONS_00026713 mRNA upstream 167349 40875873 ~ 40884087 (-) True XLOC_013580
TCONS_00026714 mRNA upstream 192044 40900568 ~ 40901707 (-) True XLOC_013581
TCONS_00026696 other downstream 1086883 39615775 ~ 39615905 (-) True XLOC_013566
TCONS_00026695 other downstream 1116123 39586546 ~ 39586665 (-) True XLOC_013565
TCONS_00026691 other downstream 1514387 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026673 other downstream 3287435 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026662 other downstream 4237322 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026751 other upstream 3356509 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026761 other upstream 3891282 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026763 other upstream 3907477 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026769 other upstream 4911034 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026799 other upstream 6795253 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

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