XLOC_013658 (kcnj1a.2)


Basic Information

Item Value
gene id XLOC_013658
gene name kcnj1a.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48498366 ~ 48530221 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026805
GGGAAAGtagggagaaagaaagaaaaagttttAAACAGTTAAGGAGGGATACGGCTTATTAATCAGTAACACACACTTGTTCATTTCCAGTTTTCTGCTTTAGCTTGCTTTTATAAGAGCGACAAAGGAGCAGGAGAACCAACAGGTGACTCAAGCTCTCTTCTCAGACTTCTCCAGCAGACTCAAAGATGACTCGCTCCTTAAGAGAGTGGTTCAAAGATTACAGGTTAAAGCAACGCATTCGCAAAAACCGACTGGTCACCAAAGATGGCCGCTGCAACATTGAGTTCGGCAACGTGTTGCACAGAAGCCGATTCACCTACGTCCTCGACTTCTGGACCACCTTGGTGGAGACCCGATGGCGGTTCATCCTCTTGTATTTTGTGGCATCCTTCACCCTCAGCTGGTTCATCTTCGGACTCTTGTGGTACTGGTTAGCAAGAAGCAATGGTGACCTGTTGTGGCAGAATCCACCACCAGATCATAAACCATGCGTTTACAGTGTTAATGATTTGACTTATGCCTACCTCTACTCATTGGAGTCCCAAGCCACTATTGGATATGGCAACGTATACGTCACTGACCAATGTCCTGCAGGTGTGGCTCTGATTACAATCCAGATGCTCATAGGACTCTTAATCAGTATATTCTGGTGTGGTATAGTCATGACCAAAATCACCCTTCCAAAAAAGAGAGCCAAAACCATCACCTTCAGTGAATCCGCTGTCATCTGCCCCAAAAAAGGCACTCTTTGCCTTCAAATCCGTGTAGCCAACCTGCGCAAGACCTTAATGATCGGCAGTCAGATTTACGGGAAGCTTCTGAGGACAACAGTCACTGGAGGTGAGACCAACATCCTGGACCAGGTCAGCATTGACTTCATGGTGGACGCCGGTAAAGACAATCTGTTTTTCGTGTGTCCTTTAACCCTGTACCACATCATTGACAAAAGCAGCCCATTTTTCAACATGGCTGCAGACACGATGCATCAGCAGGACTTTGAGCTTGTGGTTTTCCTGGATAGCATGGCCGAAACCACCAGCTCCTCCTGCCAGGTCAGGACTTCATACATCCCTCAGGAGATCATGTGGGGCTATGACTTTCTCCCGATCATCTCCCGCAGTAAAGAGGGAAGATATCAAGTGGACTTTTCCAACTTTGCCAAAGAGGTGCCTGTTCCTACCGCACATTGCTCCCGCTGCTACCACAATGAGCCCGGAAACCATCTCCATCTCCAGGGCATTGACAACAAGGGCTTTGAGGTGATTGATATAGAGGTTCAAAACAGCACCAACATGTAAGGCTTTTTGACTGACTGGTCAACATCTTGCACTATGCCGGAAACATTGAACACTATGTCACAATCCCAGTTCTATCCCTTAGCTCATCCCCTTACCCCTCATTTTGCCTATTAATGTGAAGGCGTAGGGGTTTCccaattttctttagcttgaaggcctTGGTCTAAGGGGAagagctagatagcccttgaaatggagattttccaggaccacactAGAAATCGAAAgggtacgaaaatttcccagaacaCAGCAGCTACAACAGCAACATGGCTGCATacgtcaggagatgcacaaatttgaGTGTTGTTTTGGTATTAGTGGGAAGGGGTAAGGGTAAAACAATAGAATTGGGAATGGGCGTAATGCTTTAAGTCCTTCATTGTGGTGATGAGAGACGAGATGAGAGTTTTAATCTCTTGATTGGTATTTGAATAGTAACACTGCAGGAATTAATTTCTTTTATCACATGTATTGCTTTACTCTGCAcacaaacaatgttttttttttgtgtctttcaCCTAAAAGAATTTTAACGTGTGAGTTGTGGAGTTAAACTATGGTTCTGTTCTTCTGTTACGTACTGTAGACATTGAATTGGATGTTGAAGTATTACCTGGAAATTCAtcattaaaagatttatttttttaatcatctttATCTCAGATTCCAGCCGGTGCTTTTGTGCTTTTGTGAATCACTCTGGGATGTTGTTTCTTATTACAATTGTACATTTCTTGTAACTTTGCATTAGtgaatgtgtaaataaaatttgtactttattt
>TCONS_00026809
GGGAAAGtagggagaaagaaagaaaaagttttAAACAGTTAAGGAGGGATACGGCTTATTAATCAGTAACACACACTTGTTCATTTCCAGTTTTCTGCTTTAGCTTGCTTTTATAAGAGCGACAAAGGAGCAGGAGAACCAACAGGTGACTCAAGCTCTCTTCTCAGACTTCTCCAGCAGACTCAAAGATGACTCGCTCCTTAAGAGAGTGGTTCAAAGATTACAGGTTAAAGCAACGCATTCGCAAAAACCGACTGGTCACCAAAGATGGCCGCTGCAACATTGAGTTCGGCAACGTGTTGCACAGAAGCCGATTCACCTACGTCCTCGACTTCTGGACCACCTTGGTGGAGACCCGATGGCGGTTCATCCTCTTGTATTTTGTGGCATCCTTCACCCTCAGCTGGTTCATCTTCGGACTCTTGTGGTACTGGTTAGCAAGAAGCAATGGTGACCTGTTGTGGCAGAATCCACCACCAGATCATAAACCATGCGTTTACAGTGTTAATGATTTGACTTATGCCTACCTCTACTCATTGGAGTCCCAAGCCACTATTGGATATGGCAACGTATACGTCACTGACCAATGTCCTGCAGGTGTGGCTCTGATTACAATCCAGATGCTCATAGGACTCTTAATCAGTATATTCTGGTGTGGTATAGTCATGACCAAAATCACCCTTCCAAAAAAGAGAGCCAAAACCATCACCTTCAGTGAATCCGCTGTCATCTGCCCCAAAAAAGGCACTCTTTGCCTTCAAATCCGTGTAGCCAACCTGCGCAAGACCTTAATGATCGGCAGTCAGATTTACGGGAAGCTTCTGAGGACAACAGTCACTGGAGGTGAGACCAACATCCTGGACCAGGTCAGCATTGACTTCATGGTGGACGCCGGTAAAGACAATCTGTTTTTCGTGTGTCCTTTAACCCTGTACCACATCATTGACAAAAGCAGCCCATTTTTCAACATGGCTGCAGACACGATGCATCAGCAGGACTTTGAGCTTGTGGTTTTCCTGGATAGCATGGCCGAAACCACCAGCTCCTCCTGCCAGGTCAGGACTTCATACATCCCTCAGGAGATCATGTGGGGCTATGACTTTCTCCCGATCATCTCCCGCAGTAAAGAGGGAAGATATCAAGTGGACTTTTCCAACTTTGCCAAAGAGGTGCCTGTTCCTACCGCACATTGCTCCCGCTGCTACCACAATGAGCCCGGAAACCATCTCCATCTCCAGGGCATTGACAACAAGGGCTTTGAGGTGATTGATATAGAGGTTCAAAACAGCACCAACATGTAAGGCTTTTTGACTGACTGGTCAACATCTTGCACTATGCCGGAAACATTGAAC

Function

symbol description
kcnj1a.2 Predicted to enable ATP-activated inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Bartter disease type 2. Orthologous to human KCNJ1 (potassium inwardly rectifying channel subfamily J member 1).

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-22 Predicted to enable ATP-activated inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Bartter disease type 2. Orthologous to human KCNJ1 (potassium inwardly rectifying channel subfamily J member 1).

Ensembl:

ensembl_id ENSDARG00000090866

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026805 False 2086 mRNA 0.43 5 48498366 48530221
TCONS_00026809 True 1352 mRNA 0.47 2 48527785 48530221

Neighbor

gene id symbol gene type direction distance location
XLOC_013656 ets1 coding downstream 201573 48279202 ~ 48296793 (-)
XLOC_013655 NA coding downstream 305280 48186556 ~ 48193086 (-)
XLOC_013654 NA coding downstream 590697 47906641 ~ 47907669 (-)
XLOC_013653 NA coding downstream 612280 47881952 ~ 47886086 (-)
XLOC_013652 NA coding downstream 620487 47874535 ~ 47877879 (-)
XLOC_013661 kcnj1a.1 coding upstream 12679 48542900 ~ 48558420 (-)
XLOC_013662 NA coding upstream 41686 48571907 ~ 48687718 (-)
XLOC_013663 st3gal4 coding upstream 165873 48696094 ~ 48745517 (-)
XLOC_013664 tirap coding upstream 222941 48753162 ~ 48755037 (-)
XLOC_013665 NA coding upstream 420788 48951009 ~ 48951722 (-)
XLOC_013384 BX323829.1 misc downstream 28956135 19542102 ~ 19542231 (-)
XLOC_013649 CABZ01112464.1 non-coding downstream 994472 47503777 ~ 47503894 (-)
XLOC_013668 NA non-coding upstream 588232 49118453 ~ 49121935 (-)
XLOC_013669 NA non-coding upstream 594607 49124828 ~ 49127340 (-)
XLOC_013670 NA non-coding upstream 595944 49126165 ~ 49126750 (-)

Expression


Co-expression Network