XLOC_013669


Basic Information

Item Value
gene id XLOC_013669
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49124828 ~ 49127340 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027441
TGTCTTGAAGCCGTGCACATCCAATTTAAGACCAAAATCTTTTCAAAATCTTCTCAGTGCTTGTCTTAAAGCCGTGCACATACAAAATTACAATGGCAAGTCCAAAAATCTCTTCAAAATATTCCCTGTTTGCCTTAAATTGGTGCACATCCAAAACAAATCCAAGTGCCCTTGATGTTGTTGTATAGACTGTGCACatccaaaataacaacacatcCAAATTCTGTGCAAAATCTTCTCAGTGTTTGATCTGAAGCCGTGCACAcccaaaataaatgcaaaatctcTTCAAAATCTTTTCAGTGTTTGCCTTAAATCTGTGCAAATCCAAAATAACTAGTCCAACATCTCTTTAAAATCATCTTAGGGTTTGATTTGAAGCTGTTGTCCAGATTGtgcacatccaaaaaaaaaaaaacaccaaaagtCCAAAATCAGTCTCTTTAAAATCTTCTCAGTGTTTGTCTTGAACCAACTCCCAAATCTCTTTCATATCTTGTTTGTGTTTATCTTAAAGCTGTGCACATCCAAAATGTGTCCAAATCCTCTTCAAAATCTTCTCAGTGTTTGCCTTGAAGCTGTTGTCCAGATTGTGCGCATCCGAAATAAGCACAAGTCGAGAAATCTCTCTGCAGAAATCAGCCTGTTGTCTCCTGTATCGCGACAGCAAACTGGTGCTGGAATGGAAAACGGGTCGACTTTCAATTGGAAATGATAAAGATTAAAGCGTGAAGTTGGAGACCAGATGGAAAGGGCCGCTTTGGAGGTCAGAGGCCAAAAAGCAGTGTGTTTATCCAGacgagagagaaaaagagagctgCTGTGAAGGAGAGAGGACGCTTTGTGCTGGCTTTAAATATTGAGATCCCGTCTGACACAGTGTTACAGCATCCACAGTCAACGTCCGGAACAATTCCAATCCACAAATATCCTGGATTTGCCtttaaagtttctcttttggATTGAGAATGTGTGCTCGGTGGTTATTTTCGCTCCTGTTTTGAAGTGCGCTCAGGTCTTTCCTCCAGACTTCATATTTTTGTCTGGCATCTTCCCTCGTAAGCTCTCAGTGTTGCTCAGAACCGctcac
>TCONS_00027442
TTTGAAGCTGTGCACATCCAATTTAAGACCAAAATCTTTTCAAAATCTTCTCAGTGCTTGTCTTAAAGCCGTGCACATACAAAATTACAATGGCAAGTCCAAAAATCTCTTCAAAATATTCCCTGTTTGCCTTAAATTGGTGCACATCCAAAACAAATCCAAGTGCCCTTGATGTTGTTGTATAGACTGTGCACatccaaaataacaacacatcCAAATTCTGTGCAAAATCTTCTCAGTGTTTGATCTGAAGCCGTGCACAcccaaaataaatgcaaaatctcTTCAAAATCTTTTCAGTGTTTGCCTTAAATCTGTGCAAATCCAAAATAACTAGTCCAACATCTCTTTAAAATCATCTTAGGGTTTGATTTGAAGCTGTTGTCCAGATTGtgcacatccaaaaaaaaaaaaacaccaaaagtCCAAAATCAGTCTCTTTAAAATCTTCTCAGTGTTTGTCTTGAACCAACTCCCAAATCTCTTTCATATCTTGTTTGTGTTTATCTTAAAGCTGTGCACATCCAAAATGTGTCCAAATCCTCTTCAAAATCTTCTCAGTGTTTGCCTTGAAGCTGTTGTCCAGATTGTGCGCATCCGAAATAAGCACAAGTCGAGAAATCTCTCTGCAGAAATCAGCCTGTTGTCTCCTGTATCGCGACAGCAAACTGGTGCTGGAATGGAAAACGGGTCGACTTTCAATTGGAAATGATAAAGATTAAAGCGTGAAGTTGGAGACCAGATGGAAAGGGCCGCTTTGGAGGTCAGAGGCCAAAAAGCAGTGTGTTTATCCAGacgagagagaaaaagagagctgCTGTGAAGGAGAGAGGACGCTTTGTGCTGGCTTTAAATATTGAGATCCCGTCTGACACAGTGTTACAGCATCCACAGTCAACGTCCGGAACAATTCCAATCCACAAATATCCTGGATTTGCCtttaaagtttctcttttggATTGAGAATGTGTGCTCGGTGGTTATTTTCGCTCCTGTTTTGAAGTGCGCTCAGGTCTTTCCTCCAGACTTCATATTTTTGTCTGGCATCTTCCCTCGTAAGCTCTCAGTGTTGCTCAGAACCGctcac
>TCONS_00027443
ACCACACATTGTACCAGTGGGAAAGCAGAAACTTCCCGTCCTCTTTTTTACTCCGCTGTTGCATCCATTCCTGCAGGACCCGAAAGAACTGCTGGAAGCTCCAGGCGGCCCCGGTCCGTTCCCCCGACACTCTTTCCTCCGTCTGGTCCAGTTCTGTCAGTCTTCCCACCACCCTCTTGCTTCCTGAAAAAATCTTCAGCGATCCTTGATATCCGCAGCTCAGACGATCCACTGAAGCTCAAAACACCACGCTTGTTGGTTGTGCTGAAGGATGAAACTGTGTGACGGTGGTGTGAAGAGAGAGACGCAGAAACATGTTCATTAATCTTTCACTCCAACAGCAGCCAGTGAAGTCTTTCTGTTTCTCAGGGTTTGACTTGAAGCAGTGCACATCCAAAATAAGTCCAATATCGCCTCAAGATCTTCTCAGTTTTGCCTTAAAGCCGTGCACATCTGAAATAAGTCAAACATTTCTTCAAGAtcttctctgtgtttgatttgaagtcatgcacatttaaaataagaCCAAAATCTCCTCAAAATCTTCTTAGTTTTGCCTTAAAGCTGTGCACGTCTAAAATAAGTCCAGCATCTCCTCAAGATCTTCTTAGTGTTTGTCTTGAGGATGTTCACATCCAAAGTAAGATCAAAACCGCTTCAAAATTTACTTAGAGTTTGATTTGAAGCCGTGCACATCCAAAATAAGTCCAATAACTCCTCAAGATCTTCTCAGAGTTTGTCTTGAAGCTGTTCACATCCAATTTAAGACCAAAATCTTTTCAAAATCTTCTCAGTGCTTGTCTTAAAGCCGTGCACATACAAAATTACAATGGCAAGTCCAAAAATCTCTTCAAAATATTCCCTGTTTGCCTTAAATTGGTGCACATCCAAAACAAATCCAAGTGCCCTTGATGTTGTTGTATAGACTGTGCACatccaaaataacaacacatcCAAATTCTGTGCAAAATCTTCTCAGTGTTTGATCTGAAGCCGTGCACAcccaaaataaatgcaaaatctcTTCAAAATCTTTTCAGTGTTTGCCTTAAATCTGTGCAAATCCAAAATAACTAGTCCAACATCTCTTTAAAATCATCTTAGGGTTTGATTTGAAGCTGTTGTCCAGATTGtgcacatccaaaaaaaaaaaaacaccaaaagtCCAAAATCAGTCTCTTTAAAATCTTCTCAGTGTTTGTCTTGAACCAACTCCCAAATCTCTTTCATATCTTGTTTGTGTTTATCTTAAAGCTGTGCACATCCAAAATGTGTCCAAATCCTCTTCAAAATCTTCTCAGTGTTTGCCTTGAAGCTGTTGTCCAGATTGTGCGCATCCGAAATAAGCACAAGTCGAGAAATCTCTCTGCAGAAATCAGCCTGTTGTCTCCTGTATCGCGACAGCAAACTGGTGCTGGAATGGAAAACGGGTCGACTTTCAATTGGAAATGATAAAGATTAAAGCGTGAAGTTGGAGACCAGATGGAAAGGGCCGCTTTGGAGGTCAGAGGCCAAAAAGCAGTGTGTTTATCCAGacgagagagaaaaagagagctgCTGTGAAGGAGAGAGGACGCTTTGTGCTGGCTTTAAATATTGAGATCCCGTCTGACACAGTGTTACAGCATCCACAGTCAACGTCCGGAACAATTCCAATCCACAAATATCCTGGATTTGCCtttaaagtttctcttttggATTGAGAATGTGTGCTCGGTGGTTATTTTCGCTCCTGTTTTGAAGTGCGCTCAGGTCTTTCCTCCAGACTTCATATTTTTGTCTGGCATCTTCCCTCGTAAGCTCTCAGTGTTGCTCAGAACCGctcac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027441 False 1090 lncRNA 0.41 2 49124828 49126037
TCONS_00027442 False 1087 lncRNA 0.40 2 49124828 49126095
TCONS_00027443 True 1827 lncRNA 0.42 3 49124828 49127340

Neighbor

gene id symbol gene type direction distance location
XLOC_013668 NA coding downstream 2893 49118453 ~ 49121935 (-)
XLOC_013667 BX663503.3 coding downstream 8446 49001425 ~ 49116382 (-)
XLOC_013666 FO681288.3 coding downstream 132465 48979123 ~ 48992363 (-)
XLOC_013665 NA coding downstream 173106 48951009 ~ 48951722 (-)
XLOC_013664 tirap coding downstream 369791 48753162 ~ 48755037 (-)
XLOC_013671 si:zfos-464b6.2 coding upstream 146649 49273989 ~ 49286521 (-)
XLOC_013672 sb:cb81 coding upstream 182613 49309953 ~ 49318823 (-)
XLOC_013673 NA coding upstream 333929 49461269 ~ 49669012 (-)
XLOC_013674 NA coding upstream 422234 49549574 ~ 49551498 (-)
XLOC_013675 NA coding upstream 670594 49797934 ~ 49877562 (-)
XLOC_013384 BX323829.1 misc downstream 29582597 19542102 ~ 19542231 (-)
XLOC_013662 NA non-coding downstream 437110 48571907 ~ 48687718 (-)
XLOC_013655 NA non-coding downstream 931742 48186556 ~ 48193086 (-)
XLOC_013654 NA non-coding downstream 1217159 47906641 ~ 47907669 (-)
XLOC_013676 NA non-coding upstream 823392 49950732 ~ 49964921 (-)
XLOC_013678 NA non-coding upstream 967899 50095239 ~ 50105253 (-)

Expression


Co-expression Network