XLOC_013671 (si:zfos-464b6.2)


Basic Information

Item Value
gene id XLOC_013671
gene name si:zfos-464b6.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49273989 ~ 49286521 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026821
TGGTGAGCAGAAGAGAGCACCCTCAGAAACATGCCTCAAACCTTTAGACTAAAACATACTTCAGATGAGTAACAAATTAAGTATGGAACATAACCCCGACTTTGGAAGGaaatctttctcttttttttggcaaatatttgaccTGCGTTGCTGTTTTGCGCAAGCAGTTAGAacatcacgcacacacacactcacacacacacacacactaacagcaGACTTGTCAACTGCGCGCTCTGCAACCTGTAGAACCGACTAAAAGAAGACAAAACATACATAAAGGAGAGGAATATGCAAAGACACGCAGGCGTTTGTGAGCTCCGGATGTTTTGCAGAAATGGATCAGTTTCAGAGCGTCATACCTGAAAAACTCCGTGGATTATGACTGTTCATCACTTCTGTCGGCATGTGTTCGAGAGGGAAATATGAACTCCTCGAAAGTGAATCAGAAGCCAAGCCTTCGAGCAAGAGGATTAGTGCCCTGAAGATCTTCTACGTCATCGGCTTTGTATCAGCGTTCACCTTCATCGCCTTCATTTATTTCCAAGACTTCGCCCAGAATGCAAGCTGGCAAACCTACGAACCCAAGCCCACAGACGCTCCCCCAACAAACCGAACATTCCTCGAGGAAGCACCTACGGCCTGCGGTGTTATAATAAACGAAGGGCCTATGATTAAAGTGGGCGATCTAAACACATACGTGACCGGCTCTTATATGGACCACCGTTTCCGGGAGGTTAAATCAATTGCGATTGTTAATCGGCAACAATTAGTGACGTATTCATGCGTGCTATGCTGTAATGGGAAAAACGTGACCACGTTAGCGCATTACGCTATTCATTCAGACCACTTCGGTTTTGAATACGGCACAGCCACTATTGCATGCCCATTAAATGACGAGTGTTTAAAACCAACGCATGTTGCTTTAACATCATCAGCCAATCACTCTGAAAGCATCACATCATTCCAAAGCATCATGAATAGAGACGTTCCTGCGGCATTCCCACATCAGTTCACCGTCTGCATCTCTGTCATGTACGACTATACGAACGTTCTCAATCTAGTTGAAGCAATGGAGATGTTTCGACTTCTCGGCGCAACAAGAGTTGCGATATATCGAACGAACTGCGATTCGAACGTGCAGAAGGTTTTGGATTATTACGTAGAGCGAGGATTCGTCGAAGTCATCCCGTGGACTATTAAAAAACACGTCCAAGTGTCTAGAGGATGGAGGAAGGACGTATCAGGAGGCGAGCTGCACTATTACGGACAGATTCCTGCACTGAACGACTGCGTTTATCGATATATGTACCAAAGCCGATATGTGGCTCTACATGACATGGATGAACTCATTTTACCTTTCGGTGTGAAAACGTGGACGGAGATGTTGCCGAATTTGGAGAAAATGTACGGGACTACCTTTGGGTTTGAGTTCGAGAACAACCAATTCCCTTTCACATCTAAAGCCAATAGGAGATATGATGTAAACGATTGGGAGAGCGTACGGGGAACTAATATACTGAAATACATCCAGCGAGTGCCCAATGATCCCAAcgcttttaataattttaaggtgATTGTGAACCCGCGGCTGGTTCTGATGGCTACTGTACATGGCTTGCTGGATACTGTGAATGTCGGTAAGCACACGGTCAGGGTAAACAGAAATGTCGCTCGAATGTACCACAGTAAAAACTTAACATATCCGCTGAACACAAATCTCATCCCCGATAATCATCTCTGGGATTATGCGGATGAGCTGATACCTGCGGTTACTAAAGTTTTACAGGACTGTGGGTTCATTACGGGTTAGGCTTTACTGCACTGAGGTGTTGCTGTCAaagattattaataaaatacGATGTCAAAACAGTA
>TCONS_00026822
tttcaccggaagtttatcgttggctttaaaactccaGCTGTGCACAGAGCCCGTTGCACCTTTTGGAAACGCAATCGCAGAATGTGGGGACGAGAGAGAAGGGGGAAATACCGGAAATATGAACTCCTCGAAAGTGAATCAGAAGCCAAGCCTTCGAGCAAGAGGATTAGTGCCCTGAAGATCTTCTACGTCATCGGCTTTGTATCAGCGTTCACCTTCATCGCCTTCATTTATTTCCAAGACTTCGCCCAGAATGCAAGCTGGCAAACCTACGAACCCAAGCCCACAGACGCTCCCCCAACAAACCGAACATTCCTCGAGGAAGCACCTACGGCCTGCGGTGTTATAATAAACGAAGGGCCTATGATTAAAGTGGGCGATCTAAACACATACGTGACCGGCTCTTATATGGACCACCGTTTCCGGGAGGTTAAATCAATTGCGATTGTTAATCGGCAACAATTAGTGACGTATTCATGCGTGCTATGCTGTAATGGGAAAAACGTGACCACGTTAGCGCATTACGCTATTCATTCAGACCACTTCGGTTTTGAATACGGCACAGCCACTATTGCATGCCCATTAAATGACGAGTGTTTAAAACCAACGCATGTTGCTTTAACATCATCAGCCAATCACTCTGAAAGCATCACATCATTCCAAAGCATCATGAATAGAGACGTTCCTGCGGCATTCCCACATCAGTTCACCGTCTGCATCTCTGTCATGTACGACTATACGAACGTTCTCAATCTAGTTGAAGCAATGGAGATGTTTCGACTTCTCGGCGCAACAAGAGTTGCGATATATCGAACGAACTGCGATTCGAACGTGCAGAAGGTTTTGGATTATTACGTAGAGCGAGGATTCGTCGAAGTCATCCCGTGGACTATTAAAAAACACGTCCAAGTGTCTAGAGGATGGAGGA
>TCONS_00026823
TTCCCAATTAGGAAAGCTTTGGATTCCGGTTTCAGCTTAGTGCAATGCAAATCTAAACGCATTTCCATTTCTGATTCACGCTCATTATCTTTTGTTTCGTATTCTGCGTTTAGTTTTCGCATTACAATTAAATGGATCAGTTTCAGAGCGTCATACCTGAAAAACTCCGTGGATTATGACTGTTCATCACTTCTGTCGGCATGTGTTCGAGAGGGAAATATGAACTCCTCGAAAGTGAATCAGAAGCCAAGCCTTCGAGCAAGAGGATTAGTGCCCTGAAGATCTTCTACGTCATCGGCTTTGTATCAGCGTTCACCTTCATCGCCTTCATTTATTTCCAAGACTTCGCCCAGAATGCAAGCTGGCAAACCTACGAACCCAAGCCCACAGACGCTCCCCCAACAAACCGAACATTCCTCGAGGAAGCACCTACGGCCTGCGGTGTTATAATAAACGAAGGGCCTATGATTAAAGTGGGCGATCTAAACACATACGTGACCGGCTCTTATATGGACCAC

Function

symbol description
si:zfos-464b6.2 Predicted to enable hexosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5337 Predicted to enable hexosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000054363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026821 False 1875 mRNA 0.45 2 49273989 49283058
TCONS_00026822 False 928 mRNA 0.46 2 49274629 49286521
TCONS_00026823 True 518 mRNA 0.45 3 49275140 49286381

Neighbor

gene id symbol gene type direction distance location
XLOC_013669 NA coding downstream 146649 49124828 ~ 49127340 (-)
XLOC_013670 NA coding downstream 147239 49126165 ~ 49126750 (-)
XLOC_013668 NA coding downstream 152054 49118453 ~ 49121935 (-)
XLOC_013667 BX663503.3 coding downstream 157607 49001425 ~ 49116382 (-)
XLOC_013666 FO681288.3 coding downstream 281626 48979123 ~ 48992363 (-)
XLOC_013672 sb:cb81 coding upstream 23432 49309953 ~ 49318823 (-)
XLOC_013673 NA coding upstream 174748 49461269 ~ 49669012 (-)
XLOC_013674 NA coding upstream 263053 49549574 ~ 49551498 (-)
XLOC_013675 NA coding upstream 511413 49797934 ~ 49877562 (-)
XLOC_013676 NA coding upstream 664211 49950732 ~ 49964921 (-)
XLOC_013384 BX323829.1 misc downstream 29731758 19542102 ~ 19542231 (-)
XLOC_013665 NA non-coding downstream 322267 48951009 ~ 48951722 (-)
XLOC_013662 NA non-coding downstream 586271 48571907 ~ 48687718 (-)
XLOC_013678 NA non-coding upstream 808718 50095239 ~ 50105253 (-)

Expression


Co-expression Network