XLOC_013666 (FO681288.3)


Basic Information

Item Value
gene id XLOC_013666
gene name FO681288.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48979123 ~ 48992363 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026815
gagttCGCATGGACCGGGTGCGAGGGGGCCGACAGAAATACAAGCGGAGAGTGGATTCAACACTGTCTGTGTTCAGCAAAACAgcatacacacacgcaaacaAGCCCATCCGTGAGTCTctcagtgcacacacacacacacacacacacacacacacacacacacacacacacacacacttataaccCGGTTGAACATGCAAACATcattttagctttgtgtttttgactgtttggcgccatcttgtgtctgaataatgtgcaggttagtgtatactccatcagctgctttagtttctgttagctttgtgtttttgactatttggcgccaccttgtgtctgaataatgtgcaggttagtgtatactccatatACTCAGTTTCATTTATCGTCAGCTTAgcatttttgactgtttagcAGGAtttagtgtctgaataatgcgcaggttagtgtatactccattcaacCGATTTCGTTTTTTAattagctttgtgtttttgactgtttggcgtcatcttgtgtctgaataatgcgcaggttagtgtatactccattcactCAGTTTCATTTAtcgtcagctttgcatttttgactgtttagcAGGAtttagtgtctgaataatgcgcaggttagagTACACTCCATTCAACGAGTTCTCGTTTTTCCGGTAGCCTGCCATTTTGACTGGTTAGCACCATTTAATGTCTAAATAATacataggttagtgtatactccattcagcaGGTTTTGTTTCTGCCAGCTTTGTGTTTatataaagaattaataaactgttaCGACTCAGAGTAAAGTTTATGGCTAATTTGTTTGCTCTGTGGCAAGTAGTTTTataataagtgggataaagtacatccaggaggttgttttcacagaataaacccTTCAGTCTTAGGGCGTAcccacactatgctatccgaatccCAGGTCtttttcccggatcatttgagaagtgtgaatgCTCtcaatcgggctcaggcacggttcagttAGCCAGCCCTGgtccagttggaagaggtgtgcccgAACCTCCTGGATCTACATTATCCCTAAACGATTGAACGGAAGACTGAGTGTGATTCAGTGTTCGTGTTTTTCAGGGAACAGGCTGATCTGTGAGCTGCTGCTATGTGAAGTGACTCCTCTGCGAGCGGCTCCTGACTCCTCGACCCCAGACAGTGACCTTAAGACCCTCATGACCTTATGTGACCTTCTGAACCGAGAGCTGCTGGTGATGATCGGATGGGCAAAACACATACCAGgtttctgcgcgctgtctctgctgGATCAGATGGCTCTCCTTCAGAGCGGCTGGATGGAGACTCTGCTGCTGAACGTGGCCTGGAGGTCTCAGGCCTTAGCAGAAGAGCTTCAGTTTGCGGAGAATCTGCGTCTGAACGAGAGTCAGAGTCAAGCGGCTGGCCTTCACGATCTCTACACGGCTCTCAGACACCTGACCTGCAGATACCAGCAGATGAGCCTCAAGCAGGAGGAGTTCATCATCCTCAAAGCCATGGCTCTCGCAAACTCTGATGCAGAGAATGTGGAGGGAGCAGAAGCGGTGCAGTGTTTCCAGGACGCTCTGCATGAAGCCCTGCAGGAGTTCGAGATCAGTCAACATCCGTCTGAAGCCCACCGCGCCGGCCGGATGCTGATGACGCTGCCGCTGCTCCGGCAGACGGCTAACAGAAGCGTCCGCTGCTTCAGACGCCTGCACACTGACGGACACGTGCCCATGCACAAACTCTTCCTGGAGATGCTGGAGGCCAAGAGCTAG
>TCONS_00026816
CATACACTGATCTGGGGTCAGTCTATACACTGATCTGGGGTCAGTCTATACACTTTTTCATGGCCAGTCCATACACTGATCTGAGGTCAGTCTATACACTTTTCCTTTCCATGGTCAGTCTATACACTGATCAGGGGTCAGTCTATACACTTTGCCTTTCCATGGTCAGTCTATACACTGATCTGGGGTCAGTCAATACACTTTTCCATGGTCAGTCCATACACTGATCTGGGGTCAGTCTATACACATTTCCTTTCCATGGCCAGTCCATACACTGATCTGGGGTCAGTCTATACACATTGCCTTTCCATGGTCAGTCTATACACTGATCTGGGGTCAGTCTATACACTTTTCCTTTCCATGGTCAGTCCATACACTGATCTGCGGTCAGTCTGTATTGGGATCTGCTATTTGTATAATGATCTGCAATCAGTGTGAATAGTAAGCTATGGTCAGTCTTACACTGATCTGCTGCCTGCACACTAATCTGGGGTCAGTCTAGGGGTGTAtcggacattttaaaagtgtgggGGAGGGCTGTATGAGACCCAAAAGTTTATAATTATTAAGTACCTGTTTCTAAAGGTCTGTCTCCAAAAGTGAGGGGGGCGTATCCCACCTGATTGCCACGCCTCTGGGTCAGTCTGTATAATGTTCTCTGGTCAGTCAGTATTAGGATCTGCTGTTGGTATACTTATCTGCAGTCTGCACACTGATCTGGGGTCAGTATGTCTCCCTGTGCCGCCGCTGTTAAGGATTGGTGCTGTCAGTTATGAAGCTCATCAATAGGGTTTTAATGATCATGCATGTGGATTAGAGTGTGACTCCGCCCACACCCGGAGCATGAGTATAATACAGCAGCTCTGTCACTCCTCCATCAGCTCATTTCACAATCACAGACATGGAGCTGAAGGACTTCTGCTTGAGCGACAACTTCCACTTTCTCAACCAGCACAATCTTCTAGATGCATCCACCTCCGACGACCCTCCATCCCCGACTGACACGCCGCTCAAAGCCGACCCGCTGAGCCCTTCCTTCAGCCTGGAAAGCAGCGCGACCCCCTTCAGCCCCGGTAGCACATCAGACAGCAGCGGCTATAGTGTGTTTTCCAGAAACCCGTCTCTAAATCCGGACTCTCCTGTGAGCTCCAGCTCCATCTCCAGCAGCAGTGCTCCGGTTCTCTTCCACCCTGCGGGACACCCGGAGCACGCGCTCATTAGCGACTACATCCCGTCGCTGAACCCGGGGCCCAAGCGCTTGTGTCTGGTGTGCGGAGACTTCGCGTCCGGGTATCACTACGGAGTGGCGTCCTGCGAAGCCTGCAAAGCCTTCTTCAAAAGAACCATTCAAGGGAACATCGAGTACAGCTGTCCTGTGGTCAATGACTGTGAAATCACCAAGAGGAGGAGAAAGTCCTGTCAGGCCTGTCGATTTCAGAAGTGTCTGCGGGCCGGCATGATGAGAGAGGgagttCGCATGGACCGGGTGCGAGGGGGCCGACAGAAATACAAGCGGAGAGTGGATTCAACACTGTCTGTGTTCAGCAAAACAgcatacacacacgcaaacaAGCCCATCCGTGAGTCTctcagtgcacacacacacacacacacacacacacacacacacacacacacacacacacacttataa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040616-3 Enables DNA-binding transcription factor activity. Acts upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in epiphysis; mucus secreting cell; retina; and retinal inner nuclear layer.

Ensembl:

ensembl_id ENSDARG00000015064 ENSDARG00000111043

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026815 False 1791 mRNA 0.48 3 48979123 48983690
TCONS_00026816 True 1654 mRNA 0.50 4 48983506 48992363

Neighbor

gene id symbol gene type direction distance location
XLOC_013665 NA coding downstream 27401 48951009 ~ 48951722 (-)
XLOC_013664 tirap coding downstream 224086 48753162 ~ 48755037 (-)
XLOC_013663 st3gal4 coding downstream 233606 48696094 ~ 48745517 (-)
XLOC_013662 NA coding downstream 291405 48571907 ~ 48687718 (-)
XLOC_013661 kcnj1a.1 coding downstream 420703 48542900 ~ 48558420 (-)
XLOC_013667 BX663503.3 coding upstream 9062 49001425 ~ 49116382 (-)
XLOC_013668 NA coding upstream 126090 49118453 ~ 49121935 (-)
XLOC_013669 NA coding upstream 132465 49124828 ~ 49127340 (-)
XLOC_013670 NA coding upstream 133802 49126165 ~ 49126750 (-)
XLOC_013671 si:zfos-464b6.2 coding upstream 281626 49273989 ~ 49286521 (-)
XLOC_013384 BX323829.1 misc downstream 29436892 19542102 ~ 19542231 (-)
XLOC_013655 NA non-coding downstream 786037 48186556 ~ 48193086 (-)
XLOC_013654 NA non-coding downstream 1071454 47906641 ~ 47907669 (-)
XLOC_013653 NA non-coding downstream 1093037 47881952 ~ 47886086 (-)
XLOC_013673 NA non-coding upstream 468906 49461269 ~ 49669012 (-)
XLOC_013674 NA non-coding upstream 557211 49549574 ~ 49551498 (-)

Expression


Co-expression Network