XLOC_013673


Basic Information

Item Value
gene id XLOC_013673
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 49461269 ~ 49669012 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026997
TGTAAGTGCTCTGACAGTCCGTTTGTCTTCATCTgtgctgtttctctctctctctgcagattGATTGCTGTATTGGAGCCAATGACTCAATGAGTGTTGTGGATCTGCTGCTTTCGCCTCAGTTTTTGCTGGATTTGATAAGATGGACGGCCTGAAGATCTTTAGACTCGTGGTTCCAGCACTCAGAAGGGACGGTGATGATGAATTTCCGCGAGGGAAAAGCTGAATGCACTGAAGTGTGACGAAACCCCATGACCACTGTCCCCTACAACGAACTCTTCATTATCACAACCCAGAAAACAGCATGATGCTCTTCAGATCATAATTGGCTGCTCATTAGCTCTAAAACAT
>TCONS_00027445
ATTTGCCCTCATAGTGGAAAAAAGAGAAAGATAAGAGattGATTGCTGTATTGGAGCCAATGACTCAATGAGTGTTGTGGATCTGCTGCTTTCGCCTCAGTTTTTGCTGGATTTGATAAGATGGACGGCCTGAAGATCTTTAGACTCGTGGTTCCAGCACTCAGAAGGGACGGTGATGATGAATTTCCGCGAGGGAAAAGCTGAATGCACTGAAGTGTGACGAAACCCCATGACCACTGTCCCCTACAACGAACTCTTCATTATCACAACCCAGAAAACAGCATGATGCTCTTCAGATCAT
>TCONS_00027446
GTTGGGGACCGTGATTCTCCTCTCACCACTCCCATTTACCGGCGGCTAAACTGCAGAAACGCGTCCGATCACCGAAAATACGCATCTCGGAAACATACGCgtctcttctttttctttttttttttttgttattctgcatGGGATTAAATCGTCGCAAGGAGGTTGCCTGTGACTTGGGATACTGTTTTGGATGTATCGGGACTTGCAATGATCGCACGGATTAGATTGTgacgctaaaaaaaaaaatggtgagtTTGCGCGCAAGTGTTTTCGCGTTTGTTTCGCGCTGATCGAACGCTCCGCTGTGATGTGGATACTTGTCAAGGACATCGTGCGTGATAAATGAGGAGAAACGACGGCGATGCTGGAAAACACTCTGCTTTTGTGATATTTGGCGATGCTCCTCGGCTGTCAAGTCGTCAGAGAGTTCGTGCGCGCGCTTTGAGGACTATAGGATCCGTCGGACCCGCGAGAGGAGTAAAGTTGAGCTGAGGTTGGATCACAAAACGCAAGattGATTGCTGTATTGGAGCCAATGACTCAATGAGTGTTGTGGATCTGCTGCTTTCGCCTCAGTTTTTGCTGGATTTGATAAGATGGACGGCCTGAAGATCTTTAGACTCGTGGTTCCAGCACTCAGAAGGGACGGTGATGATGAATTTCCGCGAGGGAAAAGCTGAATGCACTGAAGTGTGACGAAACCCCATGACCACTGTCCCCTACAACGAACTCTTCATTATCACAACCCAGAAAACAGCATGATGCTCTTCAGATCAT

Function

GO:

id name namespace
GO:0099504 synaptic vesicle cycle biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026997 False 351 lncRNA 0.46 2 49461269 49510853
TCONS_00027445 False 301 lncRNA 0.45 3 49461297 49518885
TCONS_00027446 True 777 lncRNA 0.48 3 49461297 49669012

Neighbor

gene id symbol gene type direction distance location
XLOC_013672 sb:cb81 coding downstream 142446 49309953 ~ 49318823 (-)
XLOC_013671 si:zfos-464b6.2 coding downstream 174748 49273989 ~ 49286521 (-)
XLOC_013669 NA coding downstream 333929 49124828 ~ 49127340 (-)
XLOC_013670 NA coding downstream 334519 49126165 ~ 49126750 (-)
XLOC_013668 NA coding downstream 339334 49118453 ~ 49121935 (-)
XLOC_013675 NA coding upstream 128922 49797934 ~ 49877562 (-)
XLOC_013676 NA coding upstream 281720 49950732 ~ 49964921 (-)
XLOC_013677 abcc8b coding upstream 371837 50040849 ~ 50083408 (-)
XLOC_013678 NA coding upstream 426227 50095239 ~ 50105253 (-)
XLOC_013679 NA coding upstream 429522 50098534 ~ 50100153 (-)
XLOC_013384 BX323829.1 misc downstream 29919038 19542102 ~ 19542231 (-)
XLOC_013665 NA non-coding downstream 509547 48951009 ~ 48951722 (-)
XLOC_013662 NA non-coding downstream 773551 48571907 ~ 48687718 (-)
XLOC_013681 CU862078.1 non-coding upstream 683993 50353005 ~ 50524042 (-)

Expression


Co-expression Network